CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_ALKMQ (Chaperone protein dnaK OS=Alkaliphilus metalliredigens (strain QYMF) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.875e-36
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+++++LVGG TR+P VQ+ V +I  + P KGVNPDE VA+GAAIQ G+L G+VK++LLLDVTPLSLGIETLGG+FTRLI RNTTI +KKSQ FSTAAD
Sbjct:  298 DAGLSASDINKIILVGGSTRIPAVQQAVKKITNQDPHKGVNPDECVAVGAAIQAGVLTGEVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPSKKSQTFSTAAD 403          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNY3 (Chaperone protein dnaK2 OS=Synechocystis sp. (strain PCC 6803) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.875e-36
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA I    +DE++LVGG TR+P VQEVV +I GK P++GVNPDE VA+GAAIQGG+L G+VK++LLLDV+PLSLG+ETLGG+ T++I RNTTI TKKS+ FSTA D
Sbjct:  321 DAKIDKSALDEIVLVGGSTRIPAVQEVVKKILGKDPNQGVNPDEVVAVGAAIQGGVLSGEVKDILLLDVSPLSLGVETLGGVMTKIIPRNTTIPTKKSETFSTAVD 426          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_TETHA (Chaperone protein dnaK OS=Tetragenococcus halophilus GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 71/106 (66.98%), Postives = 90/106 (84.91%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA+++  D+D+V+LVGG TR+P V E V +  GK P+K VNPDE VA+GAAIQ G++ GDVK+++LLDVTPLSLGIET+GG+FT+LI+RNTTI T KSQVFSTAAD
Sbjct:  297 DADLSQSDIDQVILVGGSTRIPSVVESVRKETGKEPNKSVNPDEVVAMGAAIQAGVISGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAAD 402          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RALME (Chaperone protein dnaK OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dnaK PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGGMTR+PKVQE V E FGK   K VNPDEAVA+GAAIQG +L GD  ++LLLDVTPLSLGIETLGG+ T++IN+NTTI TK +QVFSTA D
Sbjct:  327 DAGVKVSDIDDVILVGGMTRMPKVQEQVREFFGKEARKDVNPDEAVAVGAAIQGSVLSGDRTDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVFSTADD 432          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PROMH (Chaperone protein dnaK OS=Proteus mirabilis (strain HI4320) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 72/106 (67.92%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   +V++V+LVGG TR+P VQ+ V+E FGK P K VNPDEAVA+GAA+QGG+L GDVK++LLLDVTPLSLGIET+GG+ T LI +NTTI TK SQVFSTA D
Sbjct:  326 DAGLKVSEVNDVILVGGQTRMPMVQKTVAEFFGKEPRKDVNPDEAVAMGAAVQGGVLAGDVKDVLLLDVTPLSLGIETMGGVMTSLIAKNTTIPTKHSQVFSTAED 431          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_LACBA (Chaperone protein dnaK OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA++   D+D V+L GG TR+P VQE V    GK P+  +NPDEAVALGAA+QGG++ GDVK+++LLDVTPLSLGIET+GG+FT+LI+RNTTI T KSQVFSTAAD
Sbjct:  299 DADLQASDIDVVILNGGSTRIPAVQEAVKSWTGKEPNHSINPDEAVALGAAVQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAAD 404          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_DIAST (Chaperone protein dnaK OS=Diaphorobacter sp. (strain TPSY) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA I+  D+++V+LVGGMTR+PKVQE V E FGK P K VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I +NTTI TK +Q FSTA D
Sbjct:  327 DAGISVSDINDVILVGGMTRMPKVQEKVKEFFGKEPRKDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMITKNTTIPTKFAQTFSTAED 432          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURTA (Chaperone protein dnaK OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKV E V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++IN+NTTI TK SQV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFFGKDPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHSQVYSTADD 432          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURM1 (Chaperone protein dnaK OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 72/106 (67.92%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKVQE V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I++NTTI TK SQV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVQEKVKEFFGKEPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMISKNTTIPTKHSQVYSTADD 432          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BLOFL (Chaperone protein dnaK OS=Blochmannia floridanus GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DAN++   V++V+LVGG TR+P VQ+ VSE F K P K VNPDEAVA+GAA+QGG+L GDVK++LLLDVTPLSLGIET+GG+ T LI +NTTI TK SQVFSTA D
Sbjct:  327 DANLSVSSVNDVILVGGQTRMPLVQKKVSEFFNKEPRKDVNPDEAVAIGAAVQGGVLSGDVKDVLLLDVTPLSLGIETMGGVMTSLIAKNTTIPTKHSQVFSTAED 432          
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ALKMQ3.875e-3666.98Chaperone protein dnaK OS=Alkaliphilus metalliredi... [more]
DNAK2_SYNY33.875e-3666.98Chaperone protein dnaK2 OS=Synechocystis sp. (stra... [more]
DNAK_TETHA5.060e-3666.98Chaperone protein dnaK OS=Tetragenococcus halophil... [more]
DNAK_RALME5.060e-3668.87Chaperone protein dnaK OS=Ralstonia metallidurans ... [more]
DNAK_PROMH5.060e-3667.92Chaperone protein dnaK OS=Proteus mirabilis (strai... [more]
DNAK_LACBA5.060e-3666.98Chaperone protein dnaK OS=Lactobacillus brevis (st... [more]
DNAK_DIAST5.060e-3668.87Chaperone protein dnaK OS=Diaphorobacter sp. (stra... [more]
DNAK_BURTA5.060e-3667.92Chaperone protein dnaK OS=Burkholderia thailandens... [more]
DNAK_BURM15.060e-3667.92Chaperone protein dnaK OS=Burkholderia multivorans... [more]
DNAK_BLOFL5.060e-3668.87Chaperone protein dnaK OS=Blochmannia floridanus G... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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