CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_ACTSZ (Chaperone protein dnaK OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  ++D+V+LVGG TR+P VQ+ V+E FGK P K VNPDEAVA+GAA+QGG+L G+V ++LLLDVTPLSLGIET+GG+ T LI +NTTI TKKSQVFSTA D
Sbjct:  326 DAGLSVSEIDDVILVGGQTRMPLVQQKVAEFFGKEPRKDVNPDEAVAVGAAVQGGVLSGNVTDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAED 431          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNP6 (Chaperone protein dnaK 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 69/106 (65.09%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DE++LVGG TR+P VQ +V ++ GK P++ VNPDE VA+GAAIQGG+L G+VK++LLLDVTPLSLG+ETLGG+ T+LI RNTTI TKKS+ FSTAAD
Sbjct:  320 DAKLALSEIDEIVLVGGSTRIPAVQAIVKQMTGKEPNQSVNPDEVVAIGAAIQGGVLAGEVKDILLLDVTPLSLGVETLGGVMTKLIPRNTTIPTKKSETFSTAAD 425          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNE7 (Chaperone protein dnaK2 OS=Synechococcus elongatus (strain PCC 7942) GN=dnaK2 PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.060e-36
Identity = 69/106 (65.09%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DE++LVGG TR+P VQ +V ++ GK P++ VNPDE VA+GAAIQGG+L G+VK++LLLDVTPLSLG+ETLGG+ T+LI RNTTI TKKS+ FSTAAD
Sbjct:  320 DAKLALSEIDEIVLVGGSTRIPAVQAIVKQMTGKEPNQSVNPDEVVAIGAAIQGGVLAGEVKDILLLDVTPLSLGVETLGGVMTKLIPRNTTIPTKKSETFSTAAD 425          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: HSP7E_YEAST (Heat shock protein SSC3, mitochondrial OS=Saccharomyces cerevisiae GN=ECM10 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.609e-36
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAA 315
            DA IT  D+ +VLLVGGM+R+PKV + V ++FGK  SK VNPDEAVALGAAIQ  +L G+V ++LLLDVTPLSLGIETLGG+FT+LI RN+TI  KKSQ+FSTAA
Sbjct:  346 DARITASDISDVLLVGGMSRMPKVADTVKKLFGKDASKAVNPDEAVALGAAIQAAVLSGEVTDVLLLDVTPLSLGIETLGGVFTKLIPRNSTIPNKKSQIFSTAA 450          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_VIBCM (Chaperone protein dnaK OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.609e-36
Identity = 70/106 (66.04%), Postives = 90/106 (84.91%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA+++  D+ +V+LVGG TR+P VQ+ V+E FGK P K VNPDEAVA+GAA+QGG+L G+VK++LLLDVTPLSLGIET+GG+ T+LI +NTTI TK +QVFSTA D
Sbjct:  325 DADLSVNDITDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKANQVFSTAED 430          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_VIBCH (Chaperone protein dnaK OS=Vibrio cholerae GN=dnaK PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 6.609e-36
Identity = 70/106 (66.04%), Postives = 90/106 (84.91%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA+++  D+ +V+LVGG TR+P VQ+ V+E FGK P K VNPDEAVA+GAA+QGG+L G+VK++LLLDVTPLSLGIET+GG+ T+LI +NTTI TK +QVFSTA D
Sbjct:  325 DADLSVNDITDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKANQVFSTAED 430          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_VIBC3 (Chaperone protein dnaK OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.609e-36
Identity = 70/106 (66.04%), Postives = 90/106 (84.91%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA+++  D+ +V+LVGG TR+P VQ+ V+E FGK P K VNPDEAVA+GAA+QGG+L G+VK++LLLDVTPLSLGIET+GG+ T+LI +NTTI TK +QVFSTA D
Sbjct:  325 DADLSVNDITDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKANQVFSTAED 430          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_MARAV (Chaperone protein dnaK OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.609e-36
Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DEV+LVGG TR+P VQE V E FGK P K VNPDEAVA+GAAIQG +L GDVK++LLLDVTPL+LGIET+GG+ T LI +NTTI TKKSQ+FSTA D
Sbjct:  326 DAGMKAGEIDEVILVGGQTRMPLVQEKVKEFFGKEPRKDVNPDEAVAMGAAIQGAVLSGDVKDVLLLDVTPLTLGIETMGGVATPLIEKNTTIPTKKSQIFSTADD 431          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURVG (Chaperone protein dnaK OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.609e-36
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKVQE V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I +NTTI TK SQV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVQEKVKEFFGKEPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMITKNTTIPTKHSQVYSTADD 432          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PSEHT (Chaperone protein dnaK OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.632e-36
Identity = 70/106 (66.04%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA+++  D+++++LVGG TR+P VQ+ V+E FGK P K VNPDEAVA+GAAIQGG+L GDVK++LLLDV+PLSLGIET+G + T LI +NTTI TKKSQ FSTA D
Sbjct:  326 DADLSVSDINDIILVGGQTRMPLVQKTVAEFFGKEPRKDVNPDEAVAVGAAIQGGVLAGDVKDVLLLDVSPLSLGIETMGSVMTALIEKNTTIPTKKSQTFSTAED 431          
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ACTSZ5.060e-3666.98Chaperone protein dnaK OS=Actinobacillus succinoge... [more]
DNAK2_SYNP65.060e-3665.09Chaperone protein dnaK 2 OS=Synechococcus sp. (str... [more]
DNAK2_SYNE75.060e-3665.09Chaperone protein dnaK2 OS=Synechococcus elongatus... [more]
HSP7E_YEAST6.609e-3669.52Heat shock protein SSC3, mitochondrial OS=Saccharo... [more]
DNAK_VIBCM6.609e-3666.04Chaperone protein dnaK OS=Vibrio cholerae serotype... [more]
DNAK_VIBCH6.609e-3666.04Chaperone protein dnaK OS=Vibrio cholerae GN=dnaK ... [more]
DNAK_VIBC36.609e-3666.04Chaperone protein dnaK OS=Vibrio cholerae serotype... [more]
DNAK_MARAV6.609e-3668.87Chaperone protein dnaK OS=Marinobacter aquaeolei (... [more]
DNAK_BURVG6.609e-3667.92Chaperone protein dnaK OS=Burkholderia vietnamiens... [more]
DNAK_PSEHT8.632e-3666.04Chaperone protein dnaK OS=Pseudoalteromonas halopl... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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