CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_MANSM (Chaperone protein dnaK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dnaK PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.632e-36
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++   +D+V+LVGG TR+P VQ+ V+E FGK P K VNPDEAVA+GAA+QGG+L G+V ++LLLDVTPLSLGIET+GG+ T LI +NTTI TKKSQVFSTA D
Sbjct:  326 DAGLSVSQIDDVILVGGQTRMPLVQQKVAEFFGKEPRKDVNPDEAVAVGAAVQGGVLAGNVTDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAED 431          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_ERWT9 (Chaperone protein dnaK OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.632e-36
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+++V+LVGG TR+P VQ  V+E FGK P K VNPDEAVA+GAA+QGG+L G+VK++LLLDVTPLSLGIET+GG+ T LI +NTTI TK SQVFSTA D
Sbjct:  326 DAGLSVSDINDVILVGGQTRMPMVQAKVAEFFGKEPRKDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTSLITKNTTIPTKHSQVFSTAED 431          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_ENTFA (Chaperone protein dnaK OS=Enterococcus faecalis GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.632e-36
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DEV+LVGG TR+P V E V +   K P+K VNPDE VA+GAAIQGG++ GDVK+++LLDVTPLSLGIET+GG+FT+LI+RNTTI T KSQVFSTAAD
Sbjct:  297 DAGLNPSEIDEVILVGGSTRIPAVVEAVRKETNKEPNKSVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAAD 402          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_CHRVO (Chaperone protein dnaK OS=Chromobacterium violaceum GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.632e-36
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+ +V+LVGG TR+PKVQ+ V E FGK P K VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T+LI +NTTI TK SQ FSTA D
Sbjct:  326 DAGVSLSDITDVILVGGQTRMPKVQDAVKEFFGKEPRKDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETLGGVMTKLIQKNTTIPTKASQTFSTADD 431          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BORA1 (Chaperone protein dnaK OS=Bordetella avium (strain 197N) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.632e-36
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGGMTR+PKVQE V E FG+ P K VNPDEAVA GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I +NTTI T+ SQ FSTA D
Sbjct:  327 DAGVKVSDIDDVILVGGMTRMPKVQEKVKEFFGREPRKDVNPDEAVAAGAAIQGSVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMIQKNTTIPTRFSQTFSTADD 432          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_ANAMM (Chaperone protein dnaK OS=Anaplasma marginale (strain St. Maries) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.632e-36
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 DANIT-TKDVDEVLLVGGMTRVPKVQEVVSEIFG-KSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA I  T  +DEV+LVGGMTR+PKV + V + FG K P KGVNPDE VA+GAAIQGGIL GDV+++LLLDV PLSLGIETLGG+FT LI RNTTI TKKSQVFSTA D
Sbjct:  323 DAGIKDTSKIDEVVLVGGMTRMPKVIQRVKDFFGGKEPCKGVNPDEVVAIGAAIQGGILTGDVRDVLLLDVAPLSLGIETLGGVFTPLIERNTTIPTKKSQVFSTAED 430          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_STAAW (Chaperone protein dnaK OS=Staphylococcus aureus (strain MW2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  D+DEV+LVGG TR+P VQE V +  GK P+KGVNPDE VA+GAAIQGG++ GDVK+++LLDVTPLSLGIE LGG    LI RNTTI T KSQ++STA D
Sbjct:  296 DAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVD 401          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_STAAU (Chaperone protein dnaK OS=Staphylococcus aureus GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  D+DEV+LVGG TR+P VQE V +  GK P+KGVNPDE VA+GAAIQGG++ GDVK+++LLDVTPLSLGIE LGG    LI RNTTI T KSQ++STA D
Sbjct:  296 DAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVD 401          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_STAAT (Chaperone protein dnaK OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  D+DEV+LVGG TR+P VQE V +  GK P+KGVNPDE VA+GAAIQGG++ GDVK+++LLDVTPLSLGIE LGG    LI RNTTI T KSQ++STA D
Sbjct:  296 DAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVD 401          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_STAAS (Chaperone protein dnaK OS=Staphylococcus aureus (strain MSSA476) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  D+DEV+LVGG TR+P VQE V +  GK P+KGVNPDE VA+GAAIQGG++ GDVK+++LLDVTPLSLGIE LGG    LI RNTTI T KSQ++STA D
Sbjct:  296 DAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVD 401          
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_MANSM8.632e-3666.98Chaperone protein dnaK OS=Mannheimia succiniciprod... [more]
DNAK_ERWT98.632e-3666.98Chaperone protein dnaK OS=Erwinia tasmaniensis (st... [more]
DNAK_ENTFA8.632e-3666.98Chaperone protein dnaK OS=Enterococcus faecalis GN... [more]
DNAK_CHRVO8.632e-3667.92Chaperone protein dnaK OS=Chromobacterium violaceu... [more]
DNAK_BORA18.632e-3667.92Chaperone protein dnaK OS=Bordetella avium (strain... [more]
DNAK_ANAMM8.632e-3673.15Chaperone protein dnaK OS=Anaplasma marginale (str... [more]
DNAK_STAAW1.127e-3566.98Chaperone protein dnaK OS=Staphylococcus aureus (s... [more]
DNAK_STAAU1.127e-3566.98Chaperone protein dnaK OS=Staphylococcus aureus GN... [more]
DNAK_STAAT1.127e-3566.98Chaperone protein dnaK OS=Staphylococcus aureus (s... [more]
DNAK_STAAS1.127e-3566.98Chaperone protein dnaK OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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