CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_SHEFN (Chaperone protein dnaK OS=Shewanella frigidimarina (strain NCIMB 400) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA+++  D++EV+LVGG TR+PKVQE V+  FGK P K VNPDEAVA+GAAIQ G+L G+VK++LLLDVTPLSLGIET+G + T+LI +NTTI TK  QVFSTA D
Sbjct:  325 DADLSISDINEVILVGGQTRMPKVQEAVTNFFGKEPRKDVNPDEAVAVGAAIQAGVLSGEVKDVLLLDVTPLSLGIETMGSVMTKLIEKNTTIPTKAQQVFSTADD 430
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RALEJ (Chaperone protein dnaK OS=Ralstonia eutropha (strain JMP134) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++D+V+LVGGMTR+PKVQE V E FGK   K VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I +NTTI TK +QVFSTA D
Sbjct:  327 DAGVKVSEIDDVILVGGMTRMPKVQEQVKEFFGKEARKDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMITKNTTIPTKHAQVFSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PSEMY (Chaperone protein dnaK OS=Pseudomonas mendocina (strain ymp) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA I    +D+V+LVGG TR+P VQ+ V+E FGK P K VNPDEAVA+GAAIQG +L GDVK++LLLDV+PL+LGIET+GG+ T LI +NTTI TKKSQVFSTA D
Sbjct:  326 DAGIDVSKIDDVILVGGQTRMPLVQKTVAEFFGKEPRKDVNPDEAVAMGAAIQGAVLAGDVKDVLLLDVSPLTLGIETMGGVMTALIEKNTTIPTKKSQVFSTADD 431
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PARUW (Chaperone protein dnaK OS=Protochlamydia amoebophila (strain UWE25) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            D+ +   D+ EV+LVGGM+R+P VQEVV  IFGK   KGVNPDE VA+GAAIQGG+L G VK++LLLDVTPL+LGIETLGG+ T L+ RNTTI T+K Q+FSTAAD
Sbjct:  328 DSGLNKDDISEVILVGGMSRMPAVQEVVKSIFGKEGHKGVNPDEVVAVGAAIQGGVLTGVVKDVLLLDVTPLTLGIETLGGVMTPLVERNTTIPTQKKQIFSTAAD 433
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_HAEPS (Chaperone protein dnaK OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 70/106 (66.04%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  ++++V+LVGG TR+P VQ+ V++ FGK P K VNPDEAVA+GAA+QGG+L GDV ++LLLDVTPLSLGIET+GG+ T LI +NTTI TKKSQVFSTA D
Sbjct:  325 DAGLSVSEINDVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAED 430
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_HAEDU (Chaperone protein dnaK OS=Haemophilus ducreyi GN=dnaK PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 70/106 (66.04%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  ++++V+LVGG TR+P VQ+ V++ FGK P K VNPDEAVA+GAA+QGG+L GDV ++LLLDVTPLSLGIET+GG+ T LI +NTTI TKKSQVFSTA D
Sbjct:  325 DAGLSVSEINDVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETMGGVMTSLIEKNTTIPTKKSQVFSTAED 430
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_CHLPB (Chaperone protein dnaK OS=Chlorobium phaeobacteroides (strain BS1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 69/106 (65.09%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            ++ + T +++EV+LVGG TR+PKVQ +V E+FG+ P++ VNPDE VA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG+ T+LI  NTTI +KK +VFSTAAD
Sbjct:  319 NSKLKTSEINEVVLVGGSTRIPKVQALVEELFGREPNRSVNPDEVVAVGAAIQGGVLSGDVSDVLLLDVTPLSLGIETLGGVMTKLIEANTTIPSKKQEVFSTAAD 424
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURCM (Chaperone protein dnaK OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKVQE V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I++NTTI TK +QV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVQEKVKEFFGKDPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMISKNTTIPTKHAQVYSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURCJ (Chaperone protein dnaK OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKV E V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++IN+NTTI TK +QV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFFGKDPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURCH (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain HI2424) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKV E V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++IN+NTTI TK +QV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFFGKDPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADD 432
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SHEFN1.127e-3566.98Chaperone protein dnaK OS=Shewanella frigidimarina... [more]
DNAK_RALEJ1.127e-3567.92Chaperone protein dnaK OS=Ralstonia eutropha (stra... [more]
DNAK_PSEMY1.127e-3567.92Chaperone protein dnaK OS=Pseudomonas mendocina (s... [more]
DNAK_PARUW1.127e-3567.92Chaperone protein dnaK OS=Protochlamydia amoebophi... [more]
DNAK_HAEPS1.127e-3566.04Chaperone protein dnaK OS=Haemophilus parasuis ser... [more]
DNAK_HAEDU1.127e-3566.04Chaperone protein dnaK OS=Haemophilus ducreyi GN=d... [more]
DNAK_CHLPB1.127e-3565.09Chaperone protein dnaK OS=Chlorobium phaeobacteroi... [more]
DNAK_BURCM1.127e-3566.98Chaperone protein dnaK OS=Burkholderia ambifaria (... [more]
DNAK_BURCJ1.127e-3566.98Chaperone protein dnaK OS=Burkholderia cepacia (st... [more]
DNAK_BURCH1.127e-3566.98Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
back to top