CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURCC (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain MC0-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKV E V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++IN+NTTI TK +QV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFFGKDPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURCA (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain AU 1054) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKV E V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++IN+NTTI TK +QV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFFGKDPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BURA4 (Chaperone protein dnaK OS=Burkholderia ambifaria (strain MC40-6) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGG TR+PKVQE V E FGK P + VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I++NTTI TK +QV+STA D
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVQEKVKEFFGKDPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMISKNTTIPTKHAQVYSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BORPD (Chaperone protein dnaK OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++D+V+LVGGMTR+PKVQE V E FGK P K VNPDEAVA GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I +NTTI T+ SQ FSTA D
Sbjct:  327 DAGVKVSEIDDVILVGGMTRMPKVQEKVKEFFGKDPRKDVNPDEAVAAGAAIQGSVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMIQKNTTIPTRFSQTFSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_ARCB4 (Chaperone protein dnaK OS=Arcobacter butzleri (strain RM4018) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            +A ++  D+DE+++VGG TR+PK  +VV E FGK  +KGVNPDE VA GAA+Q G+LRGDVK++LLLDVTPLSLGIETLGG+ T+LI++ TTI  KKSQVFSTA D
Sbjct:  320 EAGLSKGDIDEIIMVGGSTRLPKANQVVKEFFGKDLNKGVNPDEVVAAGAAVQAGVLRGDVKDVLLLDVTPLSLGIETLGGVMTKLIDKGTTIPVKKSQVFSTADD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_ACIAC (Chaperone protein dnaK OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.127e-35
Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA I+  D+ +V+LVGGMTR+PKVQE V E FGK P K VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I +NTTI TK +Q FSTA D
Sbjct:  327 DAGISVSDIHDVILVGGMTRMPKVQEKVKEFFGKEPRKDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMITKNTTIPTKFAQTFSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_YERPY (Chaperone protein dnaK OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.472e-35
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+ +V+LVGG TR+P VQ+ V++ FGK P K VNPDEAVA+GAA+QGG+L G+VK++LLLDVTPLSLGIET+GG+ T LI +NTTI TK SQVFSTA D
Sbjct:  326 DAGLSVSDIQDVILVGGQTRMPMVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGEVKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAED 431
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_YERPS (Chaperone protein dnaK OS=Yersinia pseudotuberculosis GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.472e-35
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+ +V+LVGG TR+P VQ+ V++ FGK P K VNPDEAVA+GAA+QGG+L G+VK++LLLDVTPLSLGIET+GG+ T LI +NTTI TK SQVFSTA D
Sbjct:  326 DAGLSVSDIQDVILVGGQTRMPMVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGEVKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAED 431
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_YERPP (Chaperone protein dnaK OS=Yersinia pestis (strain Pestoides F) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.472e-35
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+ +V+LVGG TR+P VQ+ V++ FGK P K VNPDEAVA+GAA+QGG+L G+VK++LLLDVTPLSLGIET+GG+ T LI +NTTI TK SQVFSTA D
Sbjct:  326 DAGLSVSDIQDVILVGGQTRMPMVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGEVKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAED 431
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_YERPN (Chaperone protein dnaK OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.472e-35
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+ +V+LVGG TR+P VQ+ V++ FGK P K VNPDEAVA+GAA+QGG+L G+VK++LLLDVTPLSLGIET+GG+ T LI +NTTI TK SQVFSTA D
Sbjct:  326 DAGLSVSDIQDVILVGGQTRMPMVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGEVKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAED 431
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BURCC1.127e-3566.98Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCA1.127e-3566.98Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURA41.127e-3566.98Chaperone protein dnaK OS=Burkholderia ambifaria (... [more]
DNAK_BORPD1.127e-3567.92Chaperone protein dnaK OS=Bordetella petrii (strai... [more]
DNAK_ARCB41.127e-3566.04Chaperone protein dnaK OS=Arcobacter butzleri (str... [more]
DNAK_ACIAC1.127e-3568.87Chaperone protein dnaK OS=Acidovorax avenae subsp.... [more]
DNAK_YERPY1.472e-3566.04Chaperone protein dnaK OS=Yersinia pseudotuberculo... [more]
DNAK_YERPS1.472e-3566.04Chaperone protein dnaK OS=Yersinia pseudotuberculo... [more]
DNAK_YERPP1.472e-3566.04Chaperone protein dnaK OS=Yersinia pestis (strain ... [more]
DNAK_YERPN1.472e-3566.04Chaperone protein dnaK OS=Yersinia pestis bv. Anti... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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