CX287073

Overview
NameCX287073
Unique NameCX287073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13420 contig Ccv1_Contig13420:674..1227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  164 QVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANN 253          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  136 QVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  193 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 257          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  130 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 194          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  179 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 243          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D ++  + K+K +KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  188 YPGGSFDPL----------GLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 49/112 (43.75%), Postives = 59/112 (52.68%), Query Frame = -1
Query:  216 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 551
            +++ LMG AE  R    AN GS G    L    Y GG  DP               D  +  + K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP  N    S
Sbjct:  149 VQVVLMGLAEAYR----ANGGSEGFLDDLD-TLYPGGPFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFAS 245          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  222 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 554
            V+E  L  + E RR+QD  NPGS+ +     F++Y    G+  Y              E      K KE+ NGRLAMLA LG+ VQ  VTG GP++NLL HL+DP +N ++
Sbjct:  144 VIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGGIFNPLNFAPTQEA-----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247          
The following BLAST results are available for this feature:
BLAST of CX287073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB26_PETSP1.135e-1341.67Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC1.135e-1341.67Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PEA1.135e-1350.67Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_CUCSA1.135e-1350.67Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA1.135e-1350.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_TOBAC1.483e-1349.33Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_APIGR1.483e-1350.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ORYSJ1.483e-1349.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_DUNTE1.937e-1343.75Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_ARATH1.937e-1340.54Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC01004D04SK Veg1 Citrus clementina cDNA clone C01004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287073 ID=CX287073; Name=CX287073; organism=Citrus clementina; type=EST; length=554bp
TTTTTTTTTTTTTAGCTAATCTAACAGTACATAAATTAATAACTAATAGA
TCCAGTTTAGCAATTAACATGTCATTTCCGCCAAGTTACATTCACTTTTC
ACATAAATAATTTTACAATGGGGAAAGTAGAATACAACAGAGTGGGGGAT
GACAAGGCTTGGAATATATAATTCCAAGCAATGAACAAGAAATTTCTCTC
TCAGTGAAACTTGAGGCTAGTCAAAACATTGTTGTTGACAGGATCAGCCA
AGTGATCCAATAGGTTCTGGTAAGGCCCAACTCCTGTAACAAGACCTTGA
ACAAAGTAACCCAAGATTGCCAACATTGCCAATCTTCCATTCTTCACTTC
CTTGAGCTTGAAATCCTTCATTGACTGCTCATCTTTCCCAAGACCCAGAG
GGTTGAATAGAGGTCCTCCAGGGTAAGCCGGATCGCCGGATCCTCCCAAG
TATTTCTCGAATCCGAGGAAGTATTGCCTGCCCATTGATCCTGGATTTGC
CCAGTCTTGGAATCTCCGGTGCTCGGCAAATCCCATGAGTGCCATTTCCA
GGAC
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