CX287075

Overview
NameCX287075
Unique NameCX287075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.144e-44
Identity = 91/203 (44.83%), Postives = 142/203 (69.95%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG--SQLESAEKELNEYISSGKS------MLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DE+A+KLKMEITSKP  LDEI+R +++L+ME+LSL  +++ AS+++LN ++  L+ LK +Q+ L +QW+ EK  +  +  +KEEI++V L+I+QA+R+YDLNRAAEL+YG  + L++  K+  + I    +      +LREEVT +DI E+++KWT IP++KL +S               V+GQ  AV++VA++IQRSR G
Sbjct:  395 IDESASKLKMEITSKPEELDEIDRKIIQLQMEKLSLKRESNLASQEKLNAIDNGLNELKSKQSSLNKQWQEEKESINTLSFLKEEIEKVQLQIEQAKRDYDLNRAAELEYGTLNSLQNKLKQKEDLIMVNNNNDQKSLLLREEVTENDITEVIAKWTSIPLTKLLKSDIEKLLDLEDKLNSKVIGQKQAVQAVADSIQRSRTG 597          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.001e-42
Identity = 88/203 (43.35%), Postives = 141/203 (69.46%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKAS--KDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEA+A+LKMEITSKP+ L+++ R +L+LEME+LSL+ +  +AS   DRL +++ EL  L+E+QA+L +QW+ EK ++  +  ++EE + +  ++ QAERE+DLN+ AELK+G       Q ++ E+++    ++G+++LRE+V  +DIAEIV++WT IPV +L +S               V+GQD AV +VA AI+R+RAG
Sbjct:  400 IDEASAQLKMEITSKPSELEDLERRLLQLEMEQLSLSGENGQASVHSDRLQQIQTELQTLQEQQARLNQQWQQEKQLLEELGRLQEEEETLRQQVNQAEREHDLNKGAELKFGQLEALQQQRQAIEEQIQALHANGQTLLREQVEEADIAEIVARWTNIPVQRLLESERQKLLQLESFLHQRVIGQDEAVVAVAAAIRRARAG 602          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.686e-42
Identity = 97/201 (48.26%), Postives = 131/201 (65.17%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAAA ++ EI S P  LDE NR +++LE+ER +L  +TD AS++RL RLE EL+ L+  Q  L  QWE EK  +  ++SIKE+I+R    I++AER YDLNRAAELKY        QLESAEK  ++       +L+EEV   DIAEIV++WTGIPV++L +S               VVGQ+ AV +V+EA+ R+RAG
Sbjct:  399 IDEAAALIRTEIDSLPADLDEANRKIMQLEIEREALRRETDVASRERLERLENELADLRAEQTALLSQWEREKGSIDHVRSIKEDIERTRHAIEEAERAYDLNRAAELKYSRLLELERQLESAEKGGHD----ETRLLKEEVRPDDIAEIVARWTGIPVTRLLESEREKLLRLADVLHERVVGQEEAVDAVSEAVLRARAG 595          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.490e-41
Identity = 89/202 (44.06%), Postives = 133/202 (65.84%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLE-------SAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAA++L M ITSKP  +DEI+R VL+LEME LSL  ++D  S +RL R+  EL  LK RQ++L  QW+ EK  +  I ++KEEI+   L+I+QA+R +DLN+AAEL++G+ +         +E  ++ + S  K++LR+EV   DIAE+VSKWT IPV+ L QS               ++GQ+ A+ +V+++I+RSR G
Sbjct:  392 IDEAASRLNMIITSKPEEIDEIDRKVLQLEMENLSLQRESDNFSLERLKRINNELHDLKIRQSELNHQWQKEKEEIDEISNLKEEIESTQLKIEQAKRSFDLNKAAELEFGTLISLQKKLKIKSENLVDSFKSGEKNLLRQEVNFDDIAEVVSKWTSIPVNNLNQSEKEKLLKLELTLKEKIIGQNNAICAVSDSIKRSRTG 593          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.334e-41
Identity = 95/201 (47.26%), Postives = 134/201 (66.67%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKEL----NEYISSGK--SMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAAA ++ EI S P  LD++ R  L+LE+E  +L  +TD ASK+RL  +E EL+ L E +  LT +WE EK  +++I++IK EI+ V LE+++AEREYDL + +ELKYG +L + EKEL    N+    GK  S+L++EVT  +IA+IVS+WTGIPVSKL ++               V GQD A+KSVA+ + RS AG
Sbjct:  392 IDEAAAMIRTEIDSMPEELDQLTRKALQLEIEIKALEKETDDASKERLKVIEKELAELNEEKKVLTSKWELEKEDISKIKNIKREIENVKLEMEKAEREYDLTKLSELKYG-KLATLEKELQEQQNKVDKDGKENSLLKQEVTADEIADIVSRWTGIPVSKLTETKKEKMLHLEDHIKERVKGQDEAIKSVADTMLRSVAG 591          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.792e-40
Identity = 88/197 (44.67%), Postives = 130/197 (65.99%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS--QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAAA+L+M + S P  +D + R  L+LE+ER +L  + D  S++RL  +EAE++ L E  A+L  +WE E+ ++ +++  +  +D V  EI+ AER+YDLNRAAEL+YG   +LE+  + L+E +  G   +R EVT  DIAEIVS+WTGIPVSKL +                VVGQD A+++VA+AI+R+RAG
Sbjct:  385 IDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKL-RGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAG 580          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.792e-40
Identity = 88/197 (44.67%), Postives = 130/197 (65.99%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS--QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAAA+L+M + S P  +D + R  L+LE+ER +L  + D  S++RL  +EAE++ L E  A+L  +WE E+ ++ +++  +  +D V  EI+ AER+YDLNRAAEL+YG   +LE+  + L+E +  G   +R EVT  DIAEIVS+WTGIPVSKL +                VVGQD A+++VA+AI+R+RAG
Sbjct:  385 IDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKL-RGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAG 580          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.378e-39
Identity = 87/208 (41.83%), Postives = 137/208 (65.87%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTND-------TDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS------QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAAA+LKMEITSKP  L++I+R +++L+ME+LSL  +        DK+SK+RL +++ E++ L+ +Q +L+ QW  EK ++  I ++KE+   + L++++AER  D  +AA++KYG        +E  E +L E   SG ++LRE+VT SDIAEIV+ WTGIP+++L ++               V+GQ  AV +V+ AI+R+RAG
Sbjct:  398 VDEAAARLKMEITSKPVELEDIDRRLMQLQMEKLSLEGEEKRPGLGADKSSKERLEKIQQEITELEGQQQELSGQWLSEKQMLEEINTLKEKEQELRLQVEKAERATDWEKAAKIKYGELEVLQHDIEEKESKLLEIQGSGNTLLREQVTESDIAEIVAGWTGIPMNRLMETERQKLLQLEGHLHQRVIGQKEAVAAVSAAIRRARAG 605          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.106e-39
Identity = 87/197 (44.16%), Postives = 128/197 (64.97%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYIS--SGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAAA+L+M + S P ++D +NR  L+LE+ER +L  +TD  SK RL  LE E++ L+E   +   +WE E+ +M ++++ ++ +D V  +I+QAER YDLN+AA L+YG +L   E+E+NE     +G   +R  VT  DIA IVS+WTGIPV+KL +                VVGQD A+ +VA+AI+R+RAG
Sbjct:  385 VDEAAARLRMALESSPESIDALNRRKLQLEIEREALKKETDAESKFRLGELEKEIADLEEEIRKQQAEWEAEREIMQKLRAAQQRLDEVRTQIEQAERAYDLNKAAPLRYG-ELPKLEQEVNELADRMAGAQFVRPMVTEEDIAAIVSRWTGIPVAKLMEGEREKLLRLEDELHKRVVGQDEAIVAVADAIRRARAG 580          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.037e-39
Identity = 86/201 (42.79%), Postives = 133/201 (66.17%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEA A ++ EI S PT LD I R + ++E+E+ +L  + D  SK+RL  LE ELS LKE+  ++T ++E EK  +  ++++K+++D V  ++++AEREYDLN+ AELKYG      SQ+E  EKE+    +S  +ML+EEVT ++I++I+S WTGIPV+KL +                V+GQD AV++V+ A+ R+RAG
Sbjct:  398 IDEAGAMIRTEIDSLPTELDSIKRKIFQMEIEKEALAKEKDSRSKERLEDLEKELSNLKEKDKEMTAKYEKEKEQIINMRNLKQKLDEVKGQLEKAEREYDLNKVAELKYGIIPGIKSQIE--EKEILIKENSQGNMLKEEVTENEISKIISHWTGIPVTKLIEGEKDKLLRLEDELKSRVIGQDEAVEAVSNAVLRARAG 596          
The following BLAST results are available for this feature:
BLAST of CX287075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CLPB_PROMA7.144e-4444.83Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB2_SYNE73.001e-4243.35Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_DESVH6.686e-4248.26Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_PROMP1.490e-4144.06Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_FUSNN4.334e-4147.26Chaperone protein clpB OS=Fusobacterium nucleatum ... [more]
CLPB_THET84.792e-4044.67Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET24.792e-4044.67Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB1_SYNY32.378e-3941.83Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_MEIRU3.106e-3944.16Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_CLOTE9.037e-3942.79Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]

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Properties
Property NameValue
Genbank descriptionC01004D07SK Veg1 Citrus clementina cDNA clone C01004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287075 ID=CX287075; Name=CX287075; organism=Citrus clementina; type=EST; length=592bp
CACGAGGTGGATGAAGCAGCTGCCAAACTGAAAATGGAAATTACTTCAAA
ACCTACTGCCCTTGATGAGATCAATCGTTCGGTATTGAAACTAGAGATGG
AGAGGCTATCTCTGACAAATGATACAGACAAAGCTTCAAAAGATAGGTTG
AACCGCCTTGAGGCTGAACTGTCACTTCTGAAGGAGAGACAAGCTCAGCT
GACTGAGCAGTGGGAGCACGAAAAGACTGTCATGACGCGCATTCAGTCCA
TTAAAGAAGAGATTGACAGAGTAAATCTTGAGATCCAGCAGGCTGAGCGT
GAGTATGATCTTAATCGTGCTGCTGAGCTGAAGTATGGGAGCCAACTTGA
AAGTGCCGAAAAAGAGTTAAATGAGTACATAAGCTCCGGCAAGTCCATGT
TGAGAGAAGAAGTTACGGGAAGTGACATTGCTGAAATTGTAAGTAAATGG
ACTGGTATTCCTGTTTCCAAGCTTCAACAATCAGAGAGGGAGAAGCTGTT
ACATTTGGAGGAAGAGCTGCACAAACGTGTTGTGGGTCAAGATCCAGCAG
TGAAATCAGTAGCTGAGGCGATTCAGCGATCTCGAGCAGGTC
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