CX287075

Overview
NameCX287075
Unique NameCX287075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_STRMU (Chaperone protein clpB OS=Streptococcus mutans GN=clpB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 53/204 (25.98%), Postives = 101/204 (49.51%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAEL---------KYGSQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEA A  ++   + P  +  +++ ++  ++  L LT D+D   K +LN     L  L+E+++QL   W+ E+ ++ ++Q ++  +  +    +QA    + N+ A+          K   ++ + EKE  +     + ++   VT  DIA +V + TGI V  + ++               +VGQD AV+ V++AI RSRAG
Sbjct:  396 IDEACAAKRLASHAYPVQMTNLSQQLISEKIRLLRLT-DSDTDDKFKLNN---HLEQLEEQKSQLLANWQRERELLDQVQELRSHLTALE---EQANLALENNQVADYVRLEDEEIRKCHQKMTALEKERLD----SQKIINVTVTREDIAAVVERLTGIKVQGVMENERDRLLHLEELLHQKIVGQDQAVQKVSQAIIRSRAG 588          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12
Identity = 50/174 (28.74%), Postives = 85/174 (48.85%), Query Frame = 1
Query:  103 RLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEK----TVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSGKSMLRE-------EVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            R+S+T+D  +A+    +R  ++  L  +    + E     +    T    ++ +++++D V  E   A +  +  +AA L+        E+ L E +   K   +E       EVT  DIA +VS WTG+PVSK+ Q+               V+GQD AV +VA+A++R+RAG
Sbjct:  363 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLR------DTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAG 530          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  226 TVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSGKSMLRE-------EVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            TV   ++ +++++D V  E   A +  +  +AA L+       +E+   E + + K+  +E       EVT  DIA +VS WTG+PVSKL +                V+GQ  AV +VA+AI+R+RAG
Sbjct:  411 TVPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLR------DSEQRFREELETTKNQWKEKQGQTDSEVTMEDIAAVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAG 533          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPV1_PSEAE (Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 48/204 (23.53%), Postives = 97/204 (47.55%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDT--DKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVM-------TRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +D A A+  + + + P  +D+  R +  LE E   +  ++    A+ +R    E  L+  +ER A L ++W  EK ++        R+++  E +D   + + + E   D  +   L   ++L   + +L+  +   + ++   V    +A +V+ WTGIPV ++ ++               ++GQD A++ +A+ IQ SRAG
Sbjct:  425 LDTACARTAISLHAVPAEVDDSRRRIEALETELAIIRRESAIGVATAERQRNAETLLAEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEVRLDEEQRQALH--ARLAELQAQLSA-LQGEEPLILPTVDYQAVASVVADWTGIPVGRMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAG 625          
The following BLAST results are available for this feature:
BLAST of CX287075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CLPB_STRMU6.521e-1325.98Chaperone protein clpB OS=Streptococcus mutans GN=... [more]
CLPC_BACSU7.210e-1228.74Negative regulator of genetic competence clpC/mecB... [more]
CLPB_OCEIH2.740e-1132.56Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPV1_PSEAE3.578e-1123.53Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 P... [more]

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Properties
Property NameValue
Genbank descriptionC01004D07SK Veg1 Citrus clementina cDNA clone C01004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287075 ID=CX287075; Name=CX287075; organism=Citrus clementina; type=EST; length=592bp
CACGAGGTGGATGAAGCAGCTGCCAAACTGAAAATGGAAATTACTTCAAA
ACCTACTGCCCTTGATGAGATCAATCGTTCGGTATTGAAACTAGAGATGG
AGAGGCTATCTCTGACAAATGATACAGACAAAGCTTCAAAAGATAGGTTG
AACCGCCTTGAGGCTGAACTGTCACTTCTGAAGGAGAGACAAGCTCAGCT
GACTGAGCAGTGGGAGCACGAAAAGACTGTCATGACGCGCATTCAGTCCA
TTAAAGAAGAGATTGACAGAGTAAATCTTGAGATCCAGCAGGCTGAGCGT
GAGTATGATCTTAATCGTGCTGCTGAGCTGAAGTATGGGAGCCAACTTGA
AAGTGCCGAAAAAGAGTTAAATGAGTACATAAGCTCCGGCAAGTCCATGT
TGAGAGAAGAAGTTACGGGAAGTGACATTGCTGAAATTGTAAGTAAATGG
ACTGGTATTCCTGTTTCCAAGCTTCAACAATCAGAGAGGGAGAAGCTGTT
ACATTTGGAGGAAGAGCTGCACAAACGTGTTGTGGGTCAAGATCCAGCAG
TGAAATCAGTAGCTGAGGCGATTCAGCGATCTCGAGCAGGTC
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