CX287075

Overview
NameCX287075
Unique NameCX287075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_CLOAB (Chaperone protein clpB OS=Clostridium acetobutylicum GN=clpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.180e-38
Identity = 86/199 (43.22%), Postives = 129/199 (64.82%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS----QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEA A ++MEI S PT LD + R + ++E+E+ +L+ ++DK S++RL  ++ ELS LK++   +T +++ EK  +  I+ +K ++D +  +I++AEREYDLN+AAELKYG     + E  EKE     +   +ML+EEVT   ++ IVSKWTGIPVSKL +                VVGQ  AVKSVA+A+ R+RAG
Sbjct:  398 IDEAGAMVRMEIDSMPTELDMLKRKIFQMEIEKEALSKESDKFSRERLESIQKELSDLKDKDKAMTAKYDKEKAQIQGIKELKTKLDEIRGQIEKAEREYDLNKAAELKYGEVPKLEHEIEEKENLIKQNGQNAMLKEEVTEEQVSNIVSKWTGIPVSKLVEGERNKLMRLSDELEKRVVGQTEAVKSVADAVIRARAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_MYCLE (Chaperone protein clpB OS=Mycobacterium leprae GN=clpB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 84/199 (42.21%), Postives = 131/199 (65.83%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSGKS----MLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAA++L+MEI S+P  +DE+ R V + E+E ++L N+ D+ASK+RL  L AEL+  KER A+LT +W++EK  +  ++ +KE+++ +  E ++AER+ DL +AAEL+YG ++   EK+L   + + ++    ML+EEV   DIA +VS WTGIP  +L +                VVGQ  AV +V++A++RSRAG
Sbjct:  395 VDEAASRLRMEIDSRPVEIDEVERLVRRFEIEEMALVNEEDEASKERLETLRAELADQKERLAELTARWQNEKNAIDVVRELKEQLETLRGESERAERDGDLAKAAELRYG-RIPEVEKKLEAAVPTAQAREDVMLKEEVGPDDIANVVSAWTGIPAGRLLEGETAKLLRMEDELGKRVVGQKKAVHAVSDAVRRSRAG 592          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_TREPA (Chaperone protein clpB OS=Treponema pallidum GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.434e-38
Identity = 87/201 (43.28%), Postives = 127/201 (63.18%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEK------ELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAA++LKMEI S+P  LD++ R +L+L +E+ SL  ++D ASK+RL +LE EL+   ER+A +  QW++EK  +   +  KEE++R+ +E     RE DLN+AAEL+YG   E  +K      E+ +       +LREEV   DIA+I+S WTGIPVSK+  S               VVGQD AV+ +++AI+R++AG
Sbjct:  394 VDEAASRLKMEIESQPVELDQVERKILQLNIEKASLLKESDPASKERLEKLEKELAGFLERRAAMQVQWQNEKGRIEESRRYKEELERLRIEETMFSREGDLNKAAELRYGKIPELEKKIMLLTAEVEKKSGLEGQLLREEVCEEDIAKIISMWTGIPVSKMMASEQQKYLQLESVLMQRVVGQDEAVRVISDAIRRNKAG 594          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.485e-38
Identity = 84/202 (41.58%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSGKS-------MLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEA A +++EI S P+ LDE+ R V++LE+E  +L  + D AS+ RL  L+ EL+  KE   Q+  +WE EK  +++I+ ++E+ID +  E+++AE  YDLN+AAEL++G ++ + EKEL E  +  +        +L+EEVT ++IAEIV +WTGIPV+KL +                V+GQD AV+ V++A+ R+RAG
Sbjct:  396 VDEACATIRVEIDSMPSELDEVTRKVMQLEIEEAALKEEKDPASERRLEILQRELADYKEEANQMKSKWESEKNEISKIREVREQIDHLRHELEEAENNYDLNKAAELRHG-RIPAVEKELLELEAENREKTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.485e-38
Identity = 84/202 (41.58%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSGKS-------MLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEA A +++EI S P+ LDE+ R V++LE+E  +L  + D AS+ RL  L+ EL+  KE   Q+  +WE EK  +++I+ ++E+ID +  E+++AE  YDLN+AAEL++G ++ + EKEL E  +  +        +L+EEVT ++IAEIV +WTGIPV+KL +                V+GQD AV+ V++A+ R+RAG
Sbjct:  396 VDEACATIRVEIDSMPSELDEVTRKVMQLEIEEAALKEEKDPASERRLEILQRELADYKEEANQMKSKWESEKNEISKIREVREQIDHLRHELEEAENNYDLNKAAELRHG-KIPAVEKELLELEAENREKTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLLKLADELHQKVIGQDDAVQLVSDAVLRARAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPA (Chaperone protein clpB OS=Mycobacterium paratuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.650e-38
Identity = 82/199 (41.21%), Postives = 132/199 (66.33%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSGKS----MLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAA++LKMEI S+P  +DE+ R V +LE+E ++L  + D+ASK+RL +L +EL+  KE+ A+LT +W++EK  +  ++ +KE+++ +  E  +AER+ DL +AAEL+YG ++   EK+L   +   ++    ML+EEV   DIAE+VS WTGIP  ++ +                VVGQ  AV++V++A++R+RAG
Sbjct:  395 VDEAASRLKMEIDSRPVEIDEVERLVRRLEIEEMALAKEEDEASKERLEKLRSELADQKEKLAELTTRWQNEKNAIDVVRELKEQLETLRGESDRAERDGDLAKAAELRYG-RIPEVEKKLEAALPQAEARENVMLKEEVGPDDIAEVVSAWTGIPAGRMLEGETAKLLRMEDELGKRVVGQKRAVQAVSDAVRRARAG 592          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.650e-38
Identity = 88/198 (44.44%), Postives = 125/198 (63.13%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG--SQLESAEKELNEYI-SSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAA++L+MEI S P  +DE+ R V +LE+E ++LT +TD AS++RL RL +EL+  +E+ ++L  +W++EK V+  ++  KEE++ +  E   AERE D  R AEL+YG   +LE    E  E I  +  SML EEVT   IAE+VS WTGIP  K+ Q                VVGQ  AV +V++A++RSRAG
Sbjct:  396 VDEAASRLRMEIDSSPQEIDELERIVRRLEIEEVALTKETDVASRERLERLRSELADEREKLSELKARWQNEKAVIDDVRKFKEELEALRSESDIAEREGDYGRVAELRYGRIPELEKKIAEAEEKIGGADNSMLTEEVTPEVIAEVVSAWTGIPAGKMMQGETEKLLNMERFLGKRVVGQHEAVTAVSDAVRRSRAG 593          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.650e-38
Identity = 83/201 (41.29%), Postives = 130/201 (64.68%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSG------KSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEA A ++ EI S PT LDE+ R +++LE+E  +L  +TD+ S++RL  L+ ELS LKE  + +  +WE EK  + +++ ++E ++R+  E+++AE  YDLN+AAEL++G ++ + EKEL E    G        +LREEV+  +IA+IVS+WTGIPV+KL +                V+GQ+ AV  V++A+ R+RAG
Sbjct:  397 VDEACATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLREHLERLRRELEEAEGNYDLNKAAELRHG-KIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.991e-38
Identity = 82/201 (40.80%), Postives = 129/201 (64.18%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEA A +++EI S P+ LDE+ R V++LE+E  +L  + D AS+ RL  L+ EL+  KE   ++  +WE EK+ +++I+ ++E+ID +  E+++AE  YDLN+AAEL++G       +L + E E  E  +    +L+EEVT ++IAEIV +WTGIPV+KL +                V+GQD AV+ V++A+ R+RAG
Sbjct:  396 VDEACATIRVEIDSMPSELDEVTRKVMQLEIEEAALKEEKDPASERRLEMLQRELADYKEEANKMKSKWESEKSEISKIREVREQIDHLRHELEEAENNYDLNKAAELRHGKIPAVEKELLALETENREKTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.991e-38
Identity = 84/201 (41.79%), Postives = 130/201 (64.68%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEY------ISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAAAKL+ME+ S P  LDEI+R + +LE+ER ++  + DK    +L  +  EL+ LKE +     +W+ EKT+M +IQ  K EI+ +  E ++AERE D  + AE++YG +L++ +KE+ +       +   K+M++EEV   DIA++VS+WTGIPVSK+ QS               V+GQD A+++VA+A++RSRAG
Sbjct:  392 MDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKP---KLEIIGKELAELKEVEKSFKAKWQSEKTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVAEIRYG-KLQALDKEIEDTQEKLRGMQGDKAMIKEEVDAEDIADVVSRWTGIPVSKMMQSEKDKLLHLEDELHQRVIGQDEAIEAVADAVRRSRAG 588          
The following BLAST results are available for this feature:
BLAST of CX287075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CLPB_CLOAB1.180e-3843.22Chaperone protein clpB OS=Clostridium acetobutylic... [more]
CLPB_MYCLE2.013e-3842.21Chaperone protein clpB OS=Mycobacterium leprae GN=... [more]
CLPB_TREPA3.434e-3843.28Chaperone protein clpB OS=Treponema pallidum GN=cl... [more]
CLPB_LISMO4.485e-3841.58Chaperone protein clpB OS=Listeria monocytogenes G... [more]
CLPB_LISMF4.485e-3841.58Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_MYCPA7.650e-3841.21Chaperone protein clpB OS=Mycobacterium paratuberc... [more]
CLPB_COREF7.650e-3844.44Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_BACCR7.650e-3841.29Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_LISIN9.991e-3840.80Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]
CLPB_BACTN9.991e-3841.79Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]

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Properties
Property NameValue
Genbank descriptionC01004D07SK Veg1 Citrus clementina cDNA clone C01004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287075 ID=CX287075; Name=CX287075; organism=Citrus clementina; type=EST; length=592bp
CACGAGGTGGATGAAGCAGCTGCCAAACTGAAAATGGAAATTACTTCAAA
ACCTACTGCCCTTGATGAGATCAATCGTTCGGTATTGAAACTAGAGATGG
AGAGGCTATCTCTGACAAATGATACAGACAAAGCTTCAAAAGATAGGTTG
AACCGCCTTGAGGCTGAACTGTCACTTCTGAAGGAGAGACAAGCTCAGCT
GACTGAGCAGTGGGAGCACGAAAAGACTGTCATGACGCGCATTCAGTCCA
TTAAAGAAGAGATTGACAGAGTAAATCTTGAGATCCAGCAGGCTGAGCGT
GAGTATGATCTTAATCGTGCTGCTGAGCTGAAGTATGGGAGCCAACTTGA
AAGTGCCGAAAAAGAGTTAAATGAGTACATAAGCTCCGGCAAGTCCATGT
TGAGAGAAGAAGTTACGGGAAGTGACATTGCTGAAATTGTAAGTAAATGG
ACTGGTATTCCTGTTTCCAAGCTTCAACAATCAGAGAGGGAGAAGCTGTT
ACATTTGGAGGAAGAGCTGCACAAACGTGTTGTGGGTCAAGATCCAGCAG
TGAAATCAGTAGCTGAGGCGATTCAGCGATCTCGAGCAGGTC
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