CX287075

Overview
NameCX287075
Unique NameCX287075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_WOLPM (Chaperone protein clpB OS=Wolbachia pipientis wMel GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.702e-34
Identity = 73/195 (37.44%), Postives = 116/195 (59.49%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAA+++++E+ SKP  +DE+ R V++L++E  +L  ++D+ SK RL ++  E+  L  + A L  +W+ EK  + RIQ   E++D    E++  +R  +L RA EL YG  +   E EL        S L++EVTG DIA IVSKWTGIPV  +  S               V+GQ  A+++++ A++RSR+G
Sbjct:  396 IDEAASRVRIEMDSKPEVIDELERKVIQLKIEAEALKKESDENSKQRLKKINEEIENLNSKFADLNSKWQMEKNKIARIQETAEKLDNARKELELVQRSGNLGRAGELMYG-VIPQLENELKNQEKVTDSFLKKEVTGDDIANIVSKWTGIPVDNMMHSEKEKLLNMENEIGRRVIGQKDAIEAISNAVRRSRSG 589          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_ENTFA (Chaperone protein clpB OS=Enterococcus faecalis GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.702e-34
Identity = 80/198 (40.40%), Postives = 122/198 (61.62%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS--QLESAEKELNE-YISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEA+A +++E+ S PT LD++ R +++LE+E  +L  ++D ASK RL  L+ EL+ L+E    +  QWE EK  +  + + + EID+   E++ AE  YDL RAA L++G+  QLE   KEL E        M++E VT ++IA++V + TGIPV+KL +                V+GQD AV +V++A+ RSRAG
Sbjct:  396 VDEASATIRVEMNSMPTELDQVTRRLMQLEIEEAALKKESDDASKKRLANLQEELADLREEANSMKMQWETEKEEVNAVSNKRAEIDKAKHELEDAENNYDLERAAVLRHGTIPQLEHELKELEEKNAKDNVKMVQESVTENEIAQVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAG 593          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.702e-34
Identity = 81/204 (39.71%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG---------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEA A+++MEI SKP  +D ++R +++L++ER ++  +TD AS  RL  +E EL  L+       E W+ EK  +   Q+IKEEIDRV  E+ + +R+   ++ AEL+YG            +SAE+E  E  S    +LR +V   +IAE+VS+ TGIPV+K+ Q                VVGQD AV+ V++AI+RSRAG
Sbjct:  393 IDEAGARIRMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDRVRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.702e-34
Identity = 81/204 (39.71%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG---------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEA A+++MEI SKP  +D ++R +++L++ER ++  +TD AS  RL  +E EL  L+       E W+ EK  +   Q+IKEEIDRV  E+ + +R+   ++ AEL+YG            +SAE+E  E  S    +LR +V   +IAE+VS+ TGIPV+K+ Q                VVGQD AV+ V++AI+RSRAG
Sbjct:  393 IDEAGARIRMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDRVRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.702e-34
Identity = 81/204 (39.71%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG---------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEA A+++MEI SKP  +D ++R +++L++ER ++  +TD AS  RL  +E EL  L+       E W+ EK  +   Q+IKEEIDRV  E+ + +R+   ++ AEL+YG            +SAE+E  E  S    +LR +V   +IAE+VS+ TGIPV+K+ Q                VVGQD AV+ V++AI+RSRAG
Sbjct:  393 IDEAGARIRMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDRVRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.753e-34
Identity = 76/198 (38.38%), Postives = 127/198 (64.14%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYIS-SGKSM--LREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEA + ++M++ SKP +LD + R +++L++E+ +L  ++D ASK RL  L  EL   +   ++L E+W+ EK  +T  Q+IK E+++  + ++QA R  DL R +EL+YG+ +   EK+L    +  GK+M  LR  VT  ++AE++++WTGIPVS++ +S               V+GQD AV++V+ AI+RSRAG
Sbjct:  394 IDEAGSSIRMQMDSKPESLDRLERRIIQLKLEQQALKKESDDASKKRLEMLNTELEQKEREYSELEEEWKAEKASLTGTQNIKTELEQAKITLEQARRVGDLARMSELQYGT-IPELEKQLAAATALEGKTMKLLRNRVTEIEVAEVLARWTGIPVSRMLKSERDKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAG 590          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.143e-33
Identity = 80/202 (39.60%), Postives = 126/202 (62.38%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDT-DKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELN------EYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAA++L++EI S PT +DE+ R +++LE+E+ +L  ++ D  S +RL +L  EL  LK + A+L   W+ EK ++ R+ S+++ ++    E ++AERE +L R AE++YG ++ + EKE+       E I     ML EEV G  +AEIVS+WTGIPVS++ +                VVGQD A+  VA AI+R+R+G
Sbjct:  396 IDEAASRLRIEIDSMPTEIDEVERRIIQLEIEKQALLRESQDPHSLERLKKLADELEELKAKSAELKGHWQREKDIIGRVSSLRQRLEEKREEAKKAEREGNLARTAEIRYG-EIPAIEKEIADRSAELEDIRKEGKMLPEEVDGELVAEIVSRWTGIPVSRMMEGEADKLVHMEDRLITRVVGQDEALVLVANAIRRARSG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.143e-33
Identity = 77/201 (38.31%), Postives = 124/201 (61.69%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS------QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAA++L+M++ SKP  LDEI+R +++L++ER +L  +TD ASKDRL R+E ELS L+E  A+LT +W+ EK  +     +K +++     +  A+R  +  +A EL YG+      QL  AE + N+      S+L E VT   +A+++S+WTGIPV ++ +                VVGQ  AV+++++A++R+RAG
Sbjct:  395 VDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREALKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENK-----GSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAG 590          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_STAEQ (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.493e-33
Identity = 80/203 (39.41%), Postives = 124/203 (61.08%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISS--------GKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VD+A A ++ E+ S PT LD++NR V++LE+E  +L N++D  SK RL  L+ ELS  KE+Q+ L  + E EK  + ++Q  + E+D     ++ A+ E +L +AAEL+YG+ +   EKEL ++  +         + M+RE V+  +I +IVS+WTGIPVSKL ++               VVGQD AV  V++A+ R+RAG
Sbjct:  393 VDQACATIRTEMGSNPTELDQVNRRVMQLEIEESALKNESDNPSKHRLEELQEELSNEKEKQSSLKSRVEQEKEKIAKVQEKRAELDSSRQALEDAQTEGNLEKAAELQYGT-IPQLEKELQKFEEAFQDETGEDSERMIREVVSDEEIGDIVSQWTGIPVSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAG 594          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_STAAW (Chaperone protein clpB OS=Staphylococcus aureus (strain MW2) GN=clpB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.493e-33
Identity = 81/202 (40.10%), Postives = 122/202 (60.40%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS--QLESAEKELNEYISSGKS-----MLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VD+A A ++ E+ S PT LD++NR V++LE+E  +L N++D ASK RL  L+ EL+  KE+QA L  + E EK  +  +Q  + ++D     ++ A+   +L +AAEL+YG+  QLE   +EL +     +      M+RE VT  +I +IVS+WTGIPVSKL ++               VVGQD AV  V++A+ R+RAG
Sbjct:  393 VDQACATIRTEMGSNPTELDQVNRRVMQLEIEESALKNESDNASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKELRELEDNFQDEQGEDTDRMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAG 594          
The following BLAST results are available for this feature:
BLAST of CX287075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CLPB_WOLPM6.702e-3437.44Chaperone protein clpB OS=Wolbachia pipientis wMel... [more]
CLPB_ENTFA6.702e-3440.40Chaperone protein clpB OS=Enterococcus faecalis GN... [more]
CLPB_BORPE6.702e-3439.71Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORPA6.702e-3439.71Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB_BORBR6.702e-3439.71Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_YERPE8.753e-3438.38Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_GEOSL1.143e-3339.60Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_BRUME1.143e-3338.31Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_STAEQ1.493e-3339.41Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_STAAW1.493e-3340.10Chaperone protein clpB OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC01004D07SK Veg1 Citrus clementina cDNA clone C01004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287075 ID=CX287075; Name=CX287075; organism=Citrus clementina; type=EST; length=592bp
CACGAGGTGGATGAAGCAGCTGCCAAACTGAAAATGGAAATTACTTCAAA
ACCTACTGCCCTTGATGAGATCAATCGTTCGGTATTGAAACTAGAGATGG
AGAGGCTATCTCTGACAAATGATACAGACAAAGCTTCAAAAGATAGGTTG
AACCGCCTTGAGGCTGAACTGTCACTTCTGAAGGAGAGACAAGCTCAGCT
GACTGAGCAGTGGGAGCACGAAAAGACTGTCATGACGCGCATTCAGTCCA
TTAAAGAAGAGATTGACAGAGTAAATCTTGAGATCCAGCAGGCTGAGCGT
GAGTATGATCTTAATCGTGCTGCTGAGCTGAAGTATGGGAGCCAACTTGA
AAGTGCCGAAAAAGAGTTAAATGAGTACATAAGCTCCGGCAAGTCCATGT
TGAGAGAAGAAGTTACGGGAAGTGACATTGCTGAAATTGTAAGTAAATGG
ACTGGTATTCCTGTTTCCAAGCTTCAACAATCAGAGAGGGAGAAGCTGTT
ACATTTGGAGGAAGAGCTGCACAAACGTGTTGTGGGTCAAGATCCAGCAG
TGAAATCAGTAGCTGAGGCGATTCAGCGATCTCGAGCAGGTC
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