CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.708e-41
Identity = 84/157 (53.50%), Postives = 116/157 (73.89%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQI-----SALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F+ A +L D EM+++  I     S L ++   +++ E +       V E D+  +++ WTGIPV K+S  ES RLL MEETLH+R+IGQ  A+ ++S+AIRRARVGL+NP+RPIASFIF+GPTGVGK+EL KAL+ Y FG+E++MIRLDMSE+ME+H
Sbjct:  446 FDIAKQLVDHEMEVRTHIRIMKQSILTNETLGLARKEIDT------VLEGDVAEVIAGWTGIPVNKISDSESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGKTELTKALSEYMFGNEDSMIRLDMSEYMEKH 596          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 2.549e-40
Identity = 88/151 (58.28%), Postives = 113/151 (74.83%), Query Frame = 1
Query:    7 KAGELRDREMD-LKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +A ELR  E+  L+A++ AL +K +        AR V   VTE DI  IVS WTGIPV K+   E ++LL++EE LHKRV+GQDEA++A++ AIRRAR GLK+PNRPI SF+F GPTGVGK+ELAK LAA  F +EEAMIR+DM+E+ME+H
Sbjct:  488 RAAELRYGELPKLEAEVEALSEKLRG-------ARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.549e-40
Identity = 88/151 (58.28%), Postives = 113/151 (74.83%), Query Frame = 1
Query:    7 KAGELRDREMD-LKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +A ELR  E+  L+A++ AL +K +        AR V   VTE DI  IVS WTGIPV K+   E ++LL++EE LHKRV+GQDEA++A++ AIRRAR GLK+PNRPI SF+F GPTGVGK+ELAK LAA  F +EEAMIR+DM+E+ME+H
Sbjct:  488 RAAELRYGELPKLEAEVEALSEKLRG-------ARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.686e-40
Identity = 82/152 (53.95%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            FE A  LRD++  L+ Q     ++ K      T   D    +++ DI  +++ WTGIP+ K++  ESDRLL +E+TLH RVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG E+AMIR+DMSEFME+H
Sbjct:  436 FENAANLRDKQTKLEKQYEDAKNEWK------TTQGDQSTSLSKEDIGEVIAGWTGIPLTKINETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEEDAMIRVDMSEFMEKH 581          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.686e-40
Identity = 82/152 (53.95%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            FE A  LRD++  L+ Q     D   E   A+     +   ++E +I  +++ WTGIP+ K++  ESDRLL +E+TLHKRVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H
Sbjct:  436 FENAANLRDKQSKLEKQYE---DAKNEWKNAQG---GLDTALSEENIAEVIAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKH 581          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.686e-40
Identity = 82/152 (53.95%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            FE A  LRD++  L+ Q     D   E   A+     +   ++E +I  +++ WTGIP+ K++  ESDRLL +E+TLHKRVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H
Sbjct:  436 FENAANLRDKQSKLEKQYE---DAKNEWKNAQG---GLDTALSEENIAEVIAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKH 581          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.818e-39
Identity = 80/152 (52.63%), Postives = 106/152 (69.74%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            FE A  LRD++  L+ Q        K     +  +      ++E DI  +++ WTGIP+ K++  ESDRLL +E+TLH RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H
Sbjct:  436 FENAANLRDKQTKLEKQYEEANTNWKNTQNGDNTS------LSEEDIGEVIAGWTGIPLTKINETESDRLLNLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKH 581          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.818e-39
Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F++AGEL         +I  L  K KE    + +A  V  VVT   + HIVS WTGIPV+K+   E D+LL+ME+ + KRV+GQ EAV+A+S+A+RRAR GL++PNRPI SFIF GPTGVGK+EL KALA++ F  + AM+R+DMSEFME+H
Sbjct:  496 FQRAGELA------YGKIPELEKKLKEAEAQDGKAGMVEEVVTPDHVAHIVSRWTGIPVDKMLQGERDKLLRMEDEIGKRVVGQGEAVQAVSKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFDDDSAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.818e-39
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 1
Query:   61 LVDKGKEMSKAETEARDVG--------PVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            L +  K++++AE + R++           VTE DI  I+S WTGIPV K+   E+ +LL +EE LHKRV+GQDEAV A++ AI+R+R GL +PNRPIASFIF GPTGVGK+ELAKALAA+ F +EEA++R+DMSE+ME+H
Sbjct:  507 LTELHKKLAEAEAKLREIQVGGRSLLRDEVTEADIAEIISKWTGIPVSKLVESEAQKLLHLEEELHKRVVGQDEAVSAVAEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELAKALAAFMFDTEEALVRIDMSEYMEKH 646          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 6.278e-39
Identity = 78/152 (51.32%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H
Sbjct:  436 FENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKH 581          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPC_ODOSI6.708e-4153.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_THET82.549e-4058.28Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET22.549e-4058.28Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPC_STAHJ9.686e-4053.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAES9.686e-4053.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ9.686e-4053.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAS12.818e-3952.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_RHILO2.818e-3954.61Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB1_THEEB2.818e-3956.43Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPC_STAAW6.278e-3951.32ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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