CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.163e-31
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  121 VVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VV    I  IV+ WTGIPV ++ T E +RLL ME+ L K+VIGQ+EAV A++ AIR +R GL +PN+PIASF+F GP+G GK+ L KALA++ F  E AMIR+DMSE+ME+H
Sbjct:  546 VVGPDQINEIVARWTGIPVTRLKTTEKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDPNQPIASFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKH 657          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.163e-31
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   61 LVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            + D+  E+     E + +   V    +  IVS WTGIPV ++   E+D+L+ ME+ L  RV+GQDEA+  ++ AIRRAR GL +PNRPI SF+F GPTGVGK+E AKALA + F  ++A++R+DMSE+ E+H
Sbjct:  516 IADRSAELEDIRKEGKMLPEEVDGELVAEIVSRWTGIPVSRMMEGEADKLVHMEDRLITRVVGQDEALVLVANAIRRARSGLSDPNRPIGSFLFLGPTGVGKTETAKALAEFLFNDDQAIVRIDMSEYQEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_CHLMU (Chaperone protein clpB OS=Chlamydia muridarum GN=clpB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.163e-31
Identity = 70/147 (47.62%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   25 DREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +R  +L+  +   ++K   +++     RD   +  EVD   I  +V+ WTGIPV+K+   ES++LL +EE+L +RV+GQ  A+ A+S +IR ARVGL +P RP+  F+F GPTGVGK+ELAKALA   F  EEAMIR DM+E+ME+H
Sbjct:  495 NRVAELRYSLIPSLEKEIRLAEEALNQRDGRLLQEEVDERLIAQVVANWTGIPVQKMLEGESEKLLVLEESLEERVVGQPFAITAVSDSIRSARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLFNKEEAMIRFDMTEYMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPE_STRPN (ATP-dependent Clp protease ATP-binding subunit clpE OS=Streptococcus pneumoniae GN=clpE PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.825e-31
Identity = 71/150 (47.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K+   R+ + +  A     + K KEM K +   +D  P ++E  I+HI+   T IPV  +   E  +L+ + E L   VIGQD+AV  I++AIRR RVGL  PNRPI SF+F GPTGVGK+EL+K LA   FGS ++MIR DMSE+ME+H
Sbjct:  375 KSQATREEDFEKAAYFRDQIAKYKEMQKKKITDQDT-PSISEKTIEHIIEQKTNIPVGDLKEKEQSQLIHLAEDLKSHVIGQDDAVDKIAKAIRRNRVGLGTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKH 523          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.825e-31
Identity = 71/151 (47.02%), Postives = 105/151 (69.54%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 453
            +EKA  LRD E  L+ ++ ++  +  E  K E +       V E  +  +VS  TGIP  +++  ES++LLK+E+TL ++VIGQ++AV +I RAIRR+R G+K+PNRP  SF+F GPTGVGKS LA+ +A   FG E+A+I++DMSE+ME+
Sbjct:  460 YEKAAGLRDEEKKLRERLQSMKQEW-ENHKEEHQVP-----VDEEAVAQVVSLQTGIPSARLTEAESEKLLKLEDTLRRKVIGQNDAVTSICRAIRRSRTGIKDPNRPTGSFLFLGPTGVGKSLLAQQIAIEMFGGEDALIQVDMSEYMEK 604          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_CHLPN (Chaperone protein clpB OS=Chlamydia pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.825e-31
Identity = 70/147 (47.62%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   25 DREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +R  +L+  +   +++  +  +A    RD   +  EVD   I  +V+ WTGIPV+K+   E+++LL +EE+L +RV+GQ  AV A+S +IR ARVGL +P RP+  F+F GPTGVGK+ELAKALA   F  EEAM+R DMSE+ME+H
Sbjct:  495 NRVAELRYSLIPQLEEEIKQDEASLNQRDNRLLQEEVDERLIAQVVANWTGIPVQKMLEGEAEKLLILEESLEERVVGQPFAVSAVSDSIRAARVGLNDPQRPLGVFLFLGPTGVGKTELAKALADLLFNKEEAMVRFDMSEYMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STRMU (Chaperone protein clpB OS=Streptococcus mutans GN=clpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.689e-31
Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 1
Query:   76 KEMSKAETEARD----VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            ++M+  E E  D    +   VT  DI  +V   TGI V+ V  +E DRLL +EE LH++++GQD+AV+ +S+AI R+R G++NP RPI SF+F GPTGVGK+ LAK LA   FGSE  M+RLDMSE+ME+H
Sbjct:  509 QKMTALEKERLDSQKIINVTVTREDIAAVVERLTGIKVQGVMENERDRLLHLEELLHQKIVGQDQAVQKVSQAIIRSRAGIQNPKRPIGSFLFLGPTGVGKTALAKRLAEVLFGSELEMVRLDMSEYMEKH 639          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_MYCLE (Chaperone protein clpB OS=Mycobacterium leprae GN=clpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 68/134 (50.75%), Postives = 96/134 (71.64%), Query Frame = 1
Query:   64 VDKGKEMSKAETEARDVGPVVTEV---DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            V+K  E +    +AR+   +  EV   DI ++VSAWTGIP  ++   E+ +LL+ME+ L KRV+GQ +AV A+S A+RR+R G+ +PNRP  SF+F GPTGVGK+ELAKALA + F  + AM+R+DMSE+ E+H
Sbjct:  510 VEKKLEAAVPTAQAREDVMLKEEVGPDDIANVVSAWTGIPAGRLLEGETAKLLRMEDELGKRVVGQKKAVHAVSDAVRRSRAGVADPNRPTGSFLFLGPTGVGKTELAKALADFLFDDQRAMVRVDMSEYGEKH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.293e-31
Identity = 68/134 (50.75%), Postives = 95/134 (70.90%), Query Frame = 1
Query:   64 VDKGKEMSKAETEARDVGPVVTEV---DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            V+K  + +  + +AR+   +  EV   DI  +VSAWTGIP  ++   E+ +LL+ME+ L KRVIGQ  AV A+S A+RR+R G+ +PNRP  +F+F GPTGVGK+ELAKALA + F  E AM+R+DMSE+ E+H
Sbjct:  510 VEKKLDAALPQAQAREQVMLKEEVGPDDIADVVSAWTGIPAGRLLEGETAKLLRMEDELGKRVIGQKAAVTAVSDAVRRSRAGVSDPNRPTGAFMFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYGEKH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.293e-31
Identity = 68/134 (50.75%), Postives = 95/134 (70.90%), Query Frame = 1
Query:   64 VDKGKEMSKAETEARDVGPVVTEV---DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            V+K  + +  + +AR+   +  EV   DI  +VSAWTGIP  ++   E+ +LL+ME+ L KRVIGQ  AV A+S A+RR+R G+ +PNRP  +F+F GPTGVGK+ELAKALA + F  E AM+R+DMSE+ E+H
Sbjct:  510 VEKKLDAALPQAQAREQVMLKEEVGPDDIADVVSAWTGIPAGRLLEGETAKLLRMEDELGKRVIGQKAAVTAVSDAVRRSRAGVSDPNRPTGAFMFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYGEKH 643          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
HS104_SCHPO2.163e-3158.04Heat shock protein 104 OS=Schizosaccharomyces pomb... [more]
CLPB_GEOSL2.163e-3148.48Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_CHLMU2.163e-3147.62Chaperone protein clpB OS=Chlamydia muridarum GN=c... [more]
CLPE_STRPN2.825e-3147.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CHLPN2.825e-3147.02Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_CHLPN2.825e-3147.62Chaperone protein clpB OS=Chlamydia pneumoniae GN=... [more]
CLPB_STRMU3.689e-3151.91Chaperone protein clpB OS=Streptococcus mutans GN=... [more]
CLPB_MYCLE4.818e-3150.75Chaperone protein clpB OS=Mycobacterium leprae GN=... [more]
CLPB_MYCTU6.293e-3150.75Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO6.293e-3150.75Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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