CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_CHLTR (Chaperone protein clpB OS=Chlamydia trachomatis GN=clpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.293e-31
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   25 DREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +R  +L+  +   +++   +++     RD   +  EVD   I  +V+ WTGIPV+K+   ES++LL +EE+L +RV+GQ  A+ A+S +IR ARVGL +P RP+  F+F GPTGVGK+ELAKALA   F  EEAMIR DM+E+ME+H
Sbjct:  495 NRVAELRYSLIPSLEEEIHLAEEALNQRDGRLLQEEVDERLIAQVVANWTGIPVQKMLEGESEKLLVLEESLEERVVGQPFAIAAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLFNKEEAMIRFDMTEYMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis GN=clpC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.219e-31
Identity = 69/151 (45.70%), Postives = 103/151 (68.21%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 453
            +EKA  LRD E  L+ ++  +    K+  ++  E   V   V E  +  +VS  TGIP  +++  ES++LL +E TL K+VIGQ +AV +I RAIRR+R G+K+PNRP+ SF+F GPTGVGK+ LA+ +A   FG E+++I++DMSE+ME+
Sbjct:  462 YEKAASLRDEEKKLREKLGNM----KQQWESNKEEHQVP--VDEEAVAQVVSVQTGIPAARLTEAESEKLLTLETTLQKKVIGQSQAVASICRAIRRSRTGIKDPNRPMGSFLFLGPTGVGKTLLAQQIAIEMFGGEDSLIQVDMSEYMEK 606          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_HELPY (Chaperone protein clpB OS=Helicobacter pylori GN=clpB PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 8.219e-31
Identity = 67/152 (44.08%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            + K  E + +E +L+ +  A+   G  +  A          +TE +I  IVS WT IPV+K+   E +R+L +E  L KRV+GQ++A+KAI++AI+R + GL + N+PI SF+F GPTGVGK+E AKALA + F S++ +IR+DMSE++E+H
Sbjct:  500 YSKIPENKKKEEELQRKWEAMQQNGALLQNA----------LTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.219e-31
Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT   I  +VSAWTGIP  K+   E+++LL ME  L KRV+GQ EAV A+S A+RR+R G+ +PNRP  SF+F GPTGVGK+ELAKA++ + F  E AM+R+DMSE+ E+H
Sbjct:  534 VTPEVIAEVVSAWTGIPAGKMMQGETEKLLNMERFLGKRVVGQHEAVTAVSDAVRRSRAGVADPNRPTGSFLFLGPTGVGKTELAKAVSEFLFDDERAMVRIDMSEYSEKH 644          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.073e-30
Identity = 67/127 (52.76%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   76 KEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +E +  E +   V   VT  DI  +VS  TGIP   +   E D+LL ME+T+ K++IGQDEA+KAI+ A+R +R GL+N NRP+ASF+F GPTGVGK+ L KALA + F +++AMIR DMSEF E+H
Sbjct:  449 EEKTLEEKKPSMVHDSVTSDDIAVVVSRATGIPTTNLMRGERDKLLNMEQTIGKKIIGQDEALKAIADAVRLSRAGLQNTNRPLASFLFLGPTGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEKH 575          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.073e-30
Identity = 69/152 (45.39%), Postives = 99/152 (65.13%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            + K  EL +RE +L  Q + + + G  +  A          V+E  I  IVS WT IPV+K+   E +++L +EE L K V+GQDEA+ AI+RAI+R + GL   NRPI SF+F GPTGVGK++ AK LA + F S++ ++R+DMSE+ME+H
Sbjct:  503 YGKIPELENREKELNTQWNRMQESGTLLKNA----------VSEESIAGIVSRWTQIPVKKMLQGEKEKVLGVEEELRKDVVGQDEALHAIARAIKRNKAGLSENNRPIGSFLFLGPTGVGKTQSAKTLAKFLFDSDKNLVRIDMSEYMEKH 644          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_CAMJE (Chaperone protein clpB OS=Campylobacter jejuni GN=clpB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.073e-30
Identity = 72/153 (47.06%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    1 FEKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F+KA EL   ++  L+ ++  L DK K+MS+     ++    V E  +  I+S WTGI V+K+ T E  + L++E+ L + VIGQD+A+ A++RAI+R + GL   N+PI SF+F GPTGVGK++ AKALA + F  E+AMIR DMSEFME+H
Sbjct:  495 FQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQ---VDEDLVAGILSKWTGISVQKMLTSEKQKFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEFMEKH 644          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.402e-30
Identity = 64/135 (47.41%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   52 ISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            I  ++ K +E   A+++   +  +V+E DI  I+S  TGIP++ + + E +RLL ME+ L + VIGQDEA+K++S A+RR+R G+++ NRP+ SF+F GPTGVGK+EL KALA + F    A++R+DMSE+ME+H
Sbjct:  507 IPEIMKKIQETENADSKGL-LKEIVSESDIASIISRITGIPIDTMLSSERERLLVMEQKLRESVIGQDEAIKSVSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDDRNAILRIDMSEYMEKH 640          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_HELHP (Chaperone protein clpB OS=Helicobacter hepaticus GN=clpB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.402e-30
Identity = 66/153 (43.14%), Postives = 108/153 (70.59%), Query Frame = 1
Query:    1 FEKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            + KA E+   ++ D++AQ +AL  + +EM +  T  ++    VT+  I  +VS W+GIP++K+   + +R+L +E  L K V+GQD+A+KAI+RAI+R + GL + +RPI SF+F GPTGVGK++ AK LA + F + ++++R+DMSE+ME+H
Sbjct:  494 YNKAAEIDYGKIPDIQAQEAALHKQWEEMQQNGTLLKNA---VTQESIAGVVSRWSGIPIKKMLQSQKERILGIESELAKSVVGQDDAIKAIARAIKRNKAGLNDASRPIGSFLFLGPTGVGKTQCAKTLAEFLFDNAKSLVRIDMSEYMEKH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: HSP78_YEAST (Heat shock protein 78, mitochondrial OS=Saccharomyces cerevisiae GN=HSP78 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.831e-30
Identity = 76/153 (49.67%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 FEKAGELR-DREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            + KA ELR  R  DL+ ++ AL +K K+  K       +   VT  DI  +V+  TGIP E V   + DRLL ME +L +RV+GQDEA+ AIS A+R  R GL +  RPIASF+F GPTG GK+EL KALA + F  E  +IR DMSEF E+H
Sbjct:  430 YTKASELRYSRIPDLEKKV-ALSEKSKDGDKVNL----LHDSVTSDDISKVVAKMTGIPTETVMKGDKDRLLYMENSLKERVVGQDEAIAAISDAVRLQRAGLTSEKRPIASFMFLGPTGTGKTELTKALAEFLFDDESNVIRFDMSEFQEKH 577          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_CHLTR6.293e-3146.94Chaperone protein clpB OS=Chlamydia trachomatis GN... [more]
CLPC_CHLTR8.219e-3145.70Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_HELPY8.219e-3144.08Chaperone protein clpB OS=Helicobacter pylori GN=c... [more]
CLPB_COREF8.219e-3156.76Chaperone protein clpB OS=Corynebacterium efficien... [more]
HSP78_SCHPO1.073e-3052.76Heat shock protein 78, mitochondrial OS=Schizosacc... [more]
CLPB_WOLSU1.073e-3045.39Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_CAMJE1.073e-3047.06Chaperone protein clpB OS=Campylobacter jejuni GN=... [more]
CLPB_RICBR1.402e-3047.41Chaperone protein clpB OS=Rickettsia bellii (strai... [more]
CLPB_HELHP1.402e-3043.14Chaperone protein clpB OS=Helicobacter hepaticus G... [more]
HSP78_YEAST1.831e-3049.67Heat shock protein 78, mitochondrial OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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