CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: HSP78_CANAL (Heat shock protein 78, mitochondrial OS=Candida albicans GN=HSP78 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.024e-29
Identity = 68/140 (48.57%), Postives = 90/140 (64.29%), Query Frame = 1
Query:   46 AQISALVDKGKEMSKAETEARDVGPV---VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            A I  L DK +E+SK E  A+    +   VT  DI  ++S  TGIPV  +   E D+LL M   L + V+GQDEA+ A+S A+R  R GL + NRPIASF+F GPTG GK+EL K+LA + F  + A++R DMSEF E+H
Sbjct:  431 ASIPELQDKIQELSKNELAAKSSNLLHDSVTSEDIAGVISKMTGIPVNNLLKGEKDKLLDMNILLRQSVVGQDEAIDAVSDAVRLQRAGLTSENRPIASFMFLGPTGTGKTELTKSLAQFLFNDKNAVVRFDMSEFQEKH 570          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.024e-29
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 1
Query:   37 DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            ++++ I+ L     E +   TE  +VGP      I  +VS WTGIPV ++  +E +RL+ + + LHKRV+GQ++AV A+S AI R+R GL  P +P  SF+F GPTGVGK+ELAKALA   F  E  ++R+DMSE+ME+H
Sbjct:  509 EVESAIAQLEGTSSEENVMLTE--NVGPE----HIAEVVSRWTGIPVTRLGQNEKERLIGLADRLHKRVVGQNQAVNAVSEAILRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 642          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPE (Chaperone protein clpB OS=Mycoplasma penetrans GN=clpB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.024e-29
Identity = 65/154 (42.21%), Postives = 101/154 (65.58%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDV--GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            ++  GE  +    L + +  L  K + + K+ +E + V     ++E+D+  I+S  T IP+ K+   E D+LL +   L KRV GQDEA+K +S  + + RVG+ NPNRPI SF+F GPTGVGK+E+AK+LA   F +E+A++R++MSE+ME+H
Sbjct:  342 YQNQGEYTEASKILYSVLPELKKKLEAIEKSISENKKVLIKDYISEIDVAEIISRITKIPLNKIFEKEQDKLLNLFNNLKKRVKGQDEALKLVSDTVLKNRVGINNPNRPIGSFLFVGPTGVGKTEVAKSLAENLFNTEKAIVRINMSEYMEKH 495          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_RICPR (Chaperone protein clpB OS=Rickettsia prowazekii GN=clpB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.644e-29
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  121 VVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +V+E DI  I+S  TGIP++ + + E +RLL +E+ L + VIGQDEA+K +S A+RR+R G+++ NRP+ SF+F GPTGVGK+EL KALA + F    A++R+DMSE+ME+H
Sbjct:  529 IVSESDIASIISRITGIPIDTMLSSERERLLVIEQKLCESVIGQDEAIKGVSDAVRRSRSGIQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDDRNALLRIDMSEYMEKH 640          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.644e-29
Identity = 68/148 (45.95%), Postives = 94/148 (63.51%), Query Frame = 1
Query:   13 GELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            G L   +  LK +   LVD  K   K           V   DI  +VS WT IPV  ++  E ++LLK+E TL +++IGQ+ A+ A+S +I+R+R GL +PNRPIASF+F GPTGVGK+EL+K +A   F S  ++ RLDMSE+ME+H
Sbjct:  502 GTLISLQKKLKIKSENLVDSFKSGEKNLLRQE-----VNFDDIAEVVSKWTSIPVNNLNQSEKEKLLKLELTLKEKIIGQNNAICAVSDSIKRSRTGLNDPNRPIASFLFLGPTGVGKTELSKVIAKTIFDSNSSITRLDMSEYMEKH 644          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 4.510e-29
Identity = 67/149 (44.97%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 453
            K G+L   E +L+ Q + +   GKE S  + E       VT  +I  IVS WTGIPV K++  + +++L +E+ + +RV GQDEA+K+++  + R+  GLK+PNRP+ SFIF GPTGVGK+ LAK LA   F SE+ ++R+DMSE+M++
Sbjct:  500 KYGKLATLEKELQEQQNKVDKDGKENSLLKQE-------VTADEIADIVSRWTGIPVSKLTETKKEKMLHLEDHIKERVKGQDEAIKSVADTMLRSVAGLKDPNRPMGSFIFLGPTGVGKTYLAKTLAYNLFDSEDNVVRIDMSEYMDK 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.005e-28
Identity = 57/111 (51.35%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VTE DI  +++ WT IP+ K+   + ++LL +E+ L+ +VIGQ +AV+A++ +I+R+R GL +P+RP+ SF+  GPTGVGK+EL+K+LA   F SE+AMIR+DMSE+ME+H
Sbjct:  538 VTENDITEVIAKWTSIPLTKLLKSDIEKLLDLEDKLNSKVIGQKQAVQAVADSIQRSRTGLSDPSRPMGSFLLLGPTGVGKTELSKSLAKELFDSEKAMIRIDMSEYMEKH 648          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_LACPL (Chaperone protein clpB OS=Lactobacillus plantarum GN=clpB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.005e-28
Identity = 69/154 (44.81%), Postives = 96/154 (62.34%), Query Frame = 1
Query:    4 EKAGELRDREMDLKAQISALVDKGKEMSKAETEARD----VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 453
            E A    D E   K Q   +    +E+   E         V   VT   I ++VS  TGIPV K+   E ++LL + + LH+RV+GQD AV A+S A+ R+R GL++PNRP+ SF+F GPTGVGK+ELAKALA   F +++ M+R+DMSE+ME+
Sbjct:  489 ENAENNYDLEQAAKLQHGTIPKLEQELKAMEANDHHEDWLVEESVTPDQIANVVSRMTGIPVAKLVAGEREKLLHLADHLHERVVGQDAAVDAVSDAVLRSRAGLQDPNRPLGSFMFLGPTGVGKTELAKALAENLFDADDHMVRIDMSEYMEK 642          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.238e-28
Identity = 65/151 (43.05%), Postives = 96/151 (63.58%), Query Frame = 1
Query:   25 DREMDLKA----QISALVDKGKEMSKAETEARD---VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +R MDL      +  AL +    ++K E+E  +   +   V    I  +VS WTGIPV ++  ++ +RL+ + + LH+RV+GQ EAV A++ A+ R+R GL  P +P  SF+F GPTGVGK+ELAKALA   F  E  ++R+DMSE+ME+H
Sbjct:  493 ERRMDLARVADLKYGALQEIDVAIAKLESETGENLMLTETVGPEQIAEVVSRWTGIPVTRLGQNDKERLVGLADRLHQRVVGQAEAVSAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.238e-28
Identity = 69/148 (46.62%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   13 GELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            GE+   E DL+ + +      +E +K      +VGP     DI  +V +WTGIP  ++   E+ +LL+ME  L +R+IGQ EAV+A+S A+R  R G+ +P+RP  SF+F GPTGVGK+ELAKALA + F  E AMIR+DMSE+ E+H
Sbjct:  504 GEIPTLERDLRWRPAE-----EEAAKDTMVKEEVGPD----DIADVVGSWTGIPAGRLLEGETQKLLRMEAELGRRLIGQSEAVQAVSDAVR-TRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDMSEYGEKH 641          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
HSP78_CANAL2.024e-2948.57Heat shock protein 78, mitochondrial OS=Candida al... [more]
HS101_ARATH2.024e-2947.14Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
CLPB_MYCPE2.024e-2942.21Chaperone protein clpB OS=Mycoplasma penetrans GN=... [more]
CLPB_RICPR2.644e-2952.68Chaperone protein clpB OS=Rickettsia prowazekii GN... [more]
CLPB_PROMP2.644e-2945.95Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_FUSNN4.510e-2944.97Chaperone protein clpB OS=Fusobacterium nucleatum ... [more]
CLPB_PROMA1.005e-2851.35Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_LACPL1.005e-2844.81Chaperone protein clpB OS=Lactobacillus plantarum ... [more]
HS101_ORYSJ2.238e-2843.05Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
CLPB_STRAL2.238e-2846.62Chaperone protein clpB OS=Streptomyces albus G GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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