CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:530..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPA_ECOLI (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli (strain K12) GN=clpA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.979e-18
Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            V   DI+ +V+    IP + VS  + D L  + + L   V GQD+A++A++ AI+ AR GL + ++P+ SF+F+GPTGVGK+E+   L+    G E  ++R DMSE+MERH
Sbjct:  421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK-ALGIE--LLRFDMSEYMERH 528          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPA_ECOL6 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O6 GN=clpA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.979e-18
Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            V   DI+ +V+    IP + VS  + D L  + + L   V GQD+A++A++ AI+ AR GL + ++P+ SF+F+GPTGVGK+E+   L+    G E  ++R DMSE+MERH
Sbjct:  421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK-ALGIE--LLRFDMSEYMERH 528          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPA_ECO57 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O157:H7 GN=clpA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.979e-18
Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            V   DI+ +V+    IP + VS  + D L  + + L   V GQD+A++A++ AI+ AR GL + ++P+ SF+F+GPTGVGK+E+   L+    G E  ++R DMSE+MERH
Sbjct:  421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK-ALGIE--LLRFDMSEYMERH 528          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.042e-17
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  139 IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            I +IV+ WTGI V ++  D+   ++++ + L +RVIGQ  A+  +S  I  AR G+ +P +P+  F+  GP+GVGK+E A A+A   +G E+ +I ++MSE+ E H
Sbjct:  557 IANIVADWTGIQVGQMLKDDIRAVMELPQRLEERVIGQPHALVQLSENIMTARAGMADPRKPLGVFMLVGPSGVGKTETALAIAESMYGGEQNLITINMSEYQESH 662          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_RAT (Caseinolytic peptidase B protein homolog OS=Rattus norvegicus GN=Clpb PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  196 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY-YFGSEEAMIRLDMSEFMERH 456
            E  R   +E+ L + +IGQ+ A+  +  AIRR   G  +   P+  F+F G +G+GK+ELAK  A Y +  +++  IRLDMSEF ERH
Sbjct:  302 EERRRFPLEQRLEQHIIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERH 388          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_MOUSE (Caseinolytic peptidase B protein homolog OS=Mus musculus GN=Clpb PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  196 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY-YFGSEEAMIRLDMSEFMERH 456
            E  R   +E+ L + +IGQ+ A+  +  AIRR   G  +   P+  F+F G +G+GK+ELAK  A Y +  +++  IRLDMSEF ERH
Sbjct:  302 EERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERH 388          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_HUMAN (Caseinolytic peptidase B protein homolog OS=Homo sapiens GN=CLPB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  196 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY-YFGSEEAMIRLDMSEFMERH 456
            E  R   +E+ L + +IGQ+ A+  +  AIRR   G  +   P+  F+F G +G+GK+ELAK  A Y +  +++  IRLDMSEF ERH
Sbjct:  332 EERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERH 418          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BOVIN (Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  196 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY-YFGSEEAMIRLDMSEFMERH 456
            E  R   +E+ L + +IGQ+ A+  +  AIRR   G  +   P+  F+F G +G+GK+ELAK  A Y +  +++  IRLDMSEF ERH
Sbjct:  302 EERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERH 388          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: ADPR_RHOER (ATP-dependent protease ATP-binding subunit-like protein OS=Rhodococcus erythropolis PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  214 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            ++ + L  +++GQ  AV A+ RAI  A VG  +P RP+A+ +  GPTGVGK+EL + +AA      + + R+DM+   + H
Sbjct:   35 RLSKALSSKIVGQQAAVDAVVRAISIAHVGATDPTRPLANILLVGPTGVGKTELVRRVAAELRSGPDDLCRIDMNALAQEH 115          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: AMIB_PSEAE (ATP-dependent protease ATP-binding subunit-like protein amiB OS=Pseudomonas aeruginosa GN=amiB PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  223 ETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            + L   V+GQD A++A+   ++  R  + +P RP+ S +F GPTGVGK+E+ +ALA    G  E   R+DM+   + H
Sbjct:   55 DCLRAEVLGQDPALQAVEDMLKVVRADIADPRRPLFSALFLGPTGVGKTEIVRALARALHGDAEGFCRVDMNTLSQEH 132          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPA_ECOLI7.979e-1842.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECOL67.979e-1842.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECO577.979e-1842.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_YEREN1.042e-1739.62Chaperone protein clpB OS=Yersinia enterocolitica ... [more]
CLPB_RAT5.009e-1242.05Caseinolytic peptidase B protein homolog OS=Rattus... [more]
CLPB_MOUSE6.542e-1242.05Caseinolytic peptidase B protein homolog OS=Mus mu... [more]
CLPB_HUMAN6.542e-1242.05Caseinolytic peptidase B protein homolog OS=Homo s... [more]
CLPB_BOVIN6.542e-1242.05Caseinolytic peptidase B protein homolog OS=Bos ta... [more]
ADPR_RHOER1.457e-1138.27ATP-dependent protease ATP-binding subunit-like pr... [more]
AMIB_PSEAE5.538e-1138.46ATP-dependent protease ATP-binding subunit-like pr... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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