CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:530..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.315e-38
Identity = 75/128 (58.59%), Postives = 100/128 (78.12%), Query Frame = 1
Query:   76 KEMSKAETEARDV-GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K++S+ +T  R +    VTE DI  I+S WTGIPV K+   E ++LL +E+ LHKRV+GQ+EAV+ +S AI+R+R GL +PNRPIASFIF GPTGVGK+ELAKALA++ F  E AM+R+DMSE+ME+H
Sbjct:  521 KQLSETQTSGRSLLREEVTEEDIAEIISKWTGIPVSKLVASEREKLLHLEDELHKRVVGQEEAVRIVSEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELAKALASFLFDDENAMVRIDMSEYMEKH 648          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 6.941e-38
Identity = 79/152 (51.97%), Postives = 107/152 (70.39%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            + K  EL  +  + ++Q+S +   G  + + E         V E DI  I+S WTGIPV K+   E  +LL++++ LH+RVIGQDEAV A+S AI+R+R GL +PNRP ASFIF GPTGVGK+ELAKALAA+ F +EEAM+R+DMSE+ME+H
Sbjct:  506 YGKLNELNRKVEETESQLSQIQKSGATLLREE---------VLESDIAEIISKWTGIPVSKLVESEMQKLLQLDDVLHQRVIGQDEAVTAVSDAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAAFLFDTEEAMVRIDMSEYMEKH 648          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.020e-37
Identity = 69/111 (62.16%), Postives = 93/111 (83.78%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VTE+++  +++ WTGIPV ++   E D+LL+ME+ LH+RVIGQDEAV+A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H
Sbjct:  531 VTEIEVAEVLARWTGIPVSRMLKSERDKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALATFLFDSDDAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.638e-37
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 1
Query:   25 DREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            ++E +LK + + L    KE+ K E E +    VVT  D+  +VS WTGIPV ++  +E  +LLK+E+ LHKRV+ Q+ AVKA++ AIRRAR GLK+P RPIASF+F GPTGVGK+EL+KALA   FG E+A+IRLDMSEF E H
Sbjct:  623 EKEAELKIEKAKLE---KELKKLEQE-KSKELVVTWDDVAEVVSEWTGIPVSRLKEEEMQKLLKLEDELHKRVVDQEHAVKAVAEAIRRARAGLKDPKRPIASFLFLGPTGVGKTELSKALAELLFGDEDALIRLDMSEFKEEH 762          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 79/153 (51.63%), Postives = 106/153 (69.28%), Query Frame = 1
Query:    7 KAGELRDREMDLKA---QISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K G L D    L+A   ++S     GK + + E         VTE DI  I+S WTGIP+ K+   E ++LL +E+ LH RVIGQDEAV A++ AI+R+R GL +PNRP ASF+F GPTGVGK+ELAKALA+Y F +E+A++R+DMSE+ME+H
Sbjct:  504 KYGNLTDLHRRLEATERELSQTQGTGKSLLREE---------VTEADIAEIISKWTGIPISKLVESEKEKLLHLEDELHHRVIGQDEAVTAVADAIQRSRAGLADPNRPTASFVFLGPTGVGKTELAKALASYMFDTEDALVRIDMSEYMEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.876e-37
Identity = 72/111 (64.86%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT+ +I  I++ WTGIPV ++   E D+LL+ME+ LHKRVIGQDEAV AIS AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H
Sbjct:  531 VTDAEIADILARWTGIPVARMLESEKDKLLRMEQELHKRVIGQDEAVNAISNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFLFDSDDAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.002e-36
Identity = 81/154 (52.60%), Postives = 110/154 (71.43%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 453
            FEKA  LRDRE  L AQ +   ++ K+    + +      VV EVD   I  ++  WTGIPV K++  E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP  SFIF+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R
Sbjct:  444 FEKAASLRDREKTLVAQRA---EREKQWRSGDLD------VVAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDR 588          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.002e-36
Identity = 80/154 (51.95%), Postives = 110/154 (71.43%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 453
            FEKA  LRDRE  L AQ +   ++ K+    + +      V+ EVD   I  ++  WTGIPV K++  E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP  SFIF+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R
Sbjct:  444 FEKAASLRDREKQLVAQRA---EREKQWRSGDLD------VIAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDR 588          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.002e-36
Identity = 81/154 (52.60%), Postives = 110/154 (71.43%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 453
            FEKA  LRDRE  L AQ +   ++ K+    + +      VV EVD   I  ++  WTGIPV K++  E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP  SFIF+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R
Sbjct:  444 FEKAASLRDREKTLVAQRA---EREKQWRSGDLD------VVAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDR 588          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.002e-36
Identity = 79/154 (51.30%), Postives = 111/154 (72.08%), Query Frame = 1
Query:    1 FEKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDV-GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            + KA EL+  ++ DL+ Q+ AL     ++++ +T  + +    V E DI  I+S WTGIP+ K+   E ++LL +E+ LH RVIGQDEAV A++ AI+R+R GL +PNRP ASFIF GPTGVGK+ELAKALA   F +EEA++R+DMSE+ME+H
Sbjct:  497 YNKAAELQYGKLTDLQRQVEALET---QLAEQQTSGKSLLREEVLESDIAEIISKWTGIPISKLVESEKEKLLHLEDELHSRVIGQDEAVTAVAEAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAKNLFDTEEALVRIDMSEYMEKH 647          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_GLOVI5.315e-3858.59Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_PLEBO6.941e-3851.97Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB_YERPE2.020e-3762.16Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_AQUAE2.638e-3755.56Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
CLPB2_ANASP4.499e-3751.63Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB_PHOLL5.876e-3764.86Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPC_MYCTU1.002e-3652.60Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCLE1.002e-3651.95Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO1.002e-3652.60Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB2_SYNY31.002e-3651.30Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
back to top