CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:530..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 80/157 (50.96%), Postives = 111/157 (70.70%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETE-ARDVGPVVTEV----DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F++AGEL             + +  KE+++AE++      P+V EV    +I HIVS WTGIPV+K+   E D+LL+ME+ L K V+GQ +AV+A+SRA+RR+R GL++PNRPI SFIF GPTGVGK+EL KALA + F  E A++R+DMSE+ME+H
Sbjct:  496 FQRAGELA---------YGVIPNLEKELAEAESQDGASANPMVQEVVTPDNIAHIVSRWTGIPVDKMLEGERDKLLRMEDELAKWVVGQGDAVQAVSRAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETALMRIDMSEYMEKH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 82/156 (52.56%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    1 FEKAGEL---RDREMDLK-AQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F+KAGEL   R  E++ + A I A  + G+ M +A          VT   I  +VS WTG+PV+K+   E D+LLKME++L KRV+GQ EAV A++ A+RR+R GL++PNRP+ SF+F GPTGVGK+EL KALA Y F  E AM+RLDMSE+ME+H
Sbjct:  497 FQKAGELAYGRIPELERQLADIEAKENSGEMMEEA----------VTANHIAQVVSRWTGVPVDKMLEGEKDKLLKMEDSLGKRVVGQAEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYMEKH 642          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 78/150 (52.00%), Postives = 109/150 (72.67%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K G+L   + D +A+ + L++     S+  T  R+    VTE DI  IV+ WTGIPV ++   E  +LL++E  LH+RVIGQ EAV+A+S AIRRAR G+K+PNRPI SF+F GPTGVGK+ELA+ALA + F +++A++RLDMSE+ME+H
Sbjct:  507 KYGKLEGVQRDREAKEAKLLEL---QSQGSTLLREQ---VTEADIAEIVAKWTGIPVNRLLESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGMKDPNRPIGSFLFMGPTGVGKTELARALAQFLFDADDALVRLDMSEYMEKH 650          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.233e-36
Identity = 77/152 (50.66%), Postives = 106/152 (69.74%), Query Frame = 1
Query:   22 RDREMDLKAQISALVDKGKEMSKAETEARD-------VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            R+ +     +++  +  G E   A  EARD       V  VVT  +I H+VS WTGIPV+K+   + ++LL+ME+ L K V+GQ EAV+A+S+A+RR+R GL++PNRPI SFIF GPTGVGK+EL K+LA + F  E AM+RLDMSE+ME+H
Sbjct:  492 RNGQFQRAGELTYGIIPGLEKELAAAEARDSSGAGSMVQEVVTPDNIAHVVSRWTGIPVDKMLEGQREKLLRMEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKSLARFLFDDETAMVRLDMSEYMEKH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.809e-36
Identity = 71/111 (63.96%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VTE +I  +VS WTGIPV K+   E ++LLKMEE LH+RVIGQ EAV A++ A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F +EEAM+R+DMSEFME+H
Sbjct:  531 VTEEEIAEVVSKWTGIPVAKMLEGEREKLLKMEELLHQRVIGQSEAVTAVANAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.809e-36
Identity = 77/155 (49.68%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    4 EKAGELRDREMDLKAQISALVDKGKEMSKAE----TEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            E A    D E   + Q   + D  + +   +    TE + +   VT+ +I  +VS WTGIPV K+   E ++LL+ME+ LH+RVIGQDEAV A+S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F +EEA++R+DMSEFME+H
Sbjct:  487 EAARRKGDLESMARIQYQTIPDLERSLQMVDQHGKTENQLLRNKVTDEEIAEVVSKWTGIPVSKMLEGEREKLLRMEQELHRRVIGQDEAVVAVSNAVRRSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEALVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.975e-36
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKG-KEMSKAETEARD---VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +AG+L  R  +L+  I   +DK  K  S+ E +  D   +   VTE ++  +VS WT IPV K+   E ++LL ME  LHKRVIGQDEAV A++ AIRR+R GL +PNRP+ SF+F GPTGVGK+EL KALA + F +E+AM+R+DMSEFME+H
Sbjct:  491 RAGDLA-RMSELQYGIIPELDKKLKAASQKEEQFHDHKLLRSRVTEEEVAEVVSKWTHIPVSKMLEGEREKLLHMETELHKRVIGQDEAVNAVANAIRRSRAGLSDPNRPVGSFLFLGPTGVGKTELCKALAVFLFDTEDAMVRIDMSEFMEKH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.497e-36
Identity = 79/150 (52.67%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K GEL   + D++ + S L++         T  R+    VTE DI  IV+ WTGIP+ ++   E  +LL++E  LH+RVIGQ EAV A+S AIRRAR G+K+P+RPI SF+F GPTGVGK+ELA+ALA + F SEEAM+R+DMSE+ME+H
Sbjct:  513 KYGELEVLQHDIEEKESKLLEI---QGSGNTLLREQ---VTESDIAEIVAGWTGIPMNRLMETERQKLLQLEGHLHQRVIGQKEAVAAVSAAIRRARAGMKDPSRPIGSFLFMGPTGVGKTELARALAGFLFDSEEAMVRIDMSEYMEKH 656          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.485e-36
Identity = 75/127 (59.06%), Postives = 97/127 (76.38%), Query Frame = 1
Query:   79 EMSKAETEARDVGPV-VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            E S     A D  P+ V   DI  + S W+GIPV++++ DE   L+ +E+ L  RV+GQDEAV AISRA++R+RVGLK+P+RPIA+ +F GPTGVGK+EL KALAA YFGSEE+M+RLDMSE+MERH
Sbjct:  574 EESSLPPAAGDDEPILVGPDDIAAVASVWSGIPVQQITADERMLLMSLEDQLRGRVVGQDEAVAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEYMERH 700          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.485e-36
Identity = 78/155 (50.32%), Postives = 109/155 (70.32%), Query Frame = 1
Query:    4 EKAGELRDREMDLKAQISALVDKGKEMSKAET-EARDVGPV---VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            E+A    D     + Q   + D  K++ +AET E +++  +   VT+ +I  ++S  TGIPV K+   E ++LL+ME+ LHKRVIGQ+EAV A++ AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H
Sbjct:  487 EQARRAGDLAKMSELQYGRIPDLEKQLEQAETSEGKEMTLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLLRMEDELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEKH 641          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_RHIME1.309e-3650.96Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_BRAJA1.710e-3652.56Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB1_ANASP1.710e-3652.00Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_AGRT52.233e-3650.66Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_PSEPK3.809e-3663.96Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_PSEAE3.809e-3649.68Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_COXBU4.975e-3652.60Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB1_SYNY36.497e-3652.67Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
ERD1_ARATH8.485e-3659.06ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPB_HAEIN8.485e-3650.32Chaperone protein clpB OS=Haemophilus influenzae G... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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