CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:530..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.485e-36
Identity = 80/151 (52.98%), Postives = 110/151 (72.85%), Query Frame = 1
Query:    7 KAGELR-DREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +A ELR  R  DL+ +++A   + ++++  + E R +  VVTE +I  IV+AWTGIPV ++   E ++LL+++E L +RVIGQDEAVK ++ AI RAR G+++P RPI SFIF GPTGVGK+ELAK LA   F SEE M+RLDMSE+ ERH
Sbjct:  502 RAAELRYGRLQDLERRLAA---EEEQLAAKQGENRLLREVVTEEEIAEIVAAWTGIPVARLQEGEREKLLRLDEILRERVIGQDEAVKLVTDAIIRARSGIRDPRRPIGSFIFLGPTGVGKTELAKTLARTLFDSEENMVRLDMSEYQERH 649          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.108e-35
Identity = 81/155 (52.26%), Postives = 103/155 (66.45%), Query Frame = 1
Query:    4 EKAGELRDREMDLKAQISALVDKGKEMSKA-ETEARDVGPV---VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            E A   +D     + Q   L    K+M  A E E  D   V   VT  +I  +VS WTGIPV K+   E D+LL+ME+ LH+RV+GQ+EA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S EAMIR+DMSEFME+H
Sbjct:  487 EAAQRRQDYAKMSEIQYGVLPQLEKQMLLANEVEHHDFKLVQDRVTAEEIAEVVSRWTGIPVNKMLEGERDKLLRMEDELHRRVVGQEEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STAAW (Chaperone protein clpB OS=Staphylococcus aureus (strain MW2) GN=clpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.108e-35
Identity = 79/152 (51.97%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    4 EKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA EL+   +  L+ ++  L D  ++    +T+ R +  VVT+ +I  IVS WTGIPV K+   E ++LL + + LHKRV+GQD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H
Sbjct:  495 EKAAELQYGTIPQLEKELRELEDNFQDEQGEDTD-RMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STAAS (Chaperone protein clpB OS=Staphylococcus aureus (strain MSSA476) GN=clpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.108e-35
Identity = 79/152 (51.97%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    4 EKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA EL+   +  L+ ++  L D  ++    +T+ R +  VVT+ +I  IVS WTGIPV K+   E ++LL + + LHKRV+GQD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H
Sbjct:  495 EKAAELQYGTIPQLEKELRELEDNFQDEQGEDTD-RMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STAAN (Chaperone protein clpB OS=Staphylococcus aureus (strain N315) GN=clpB PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.108e-35
Identity = 79/152 (51.97%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    4 EKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA EL+   +  L+ ++  L D  ++    +T+ R +  VVT+ +I  IVS WTGIPV K+   E ++LL + + LHKRV+GQD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H
Sbjct:  495 EKAAELQYGTIPQLEKELRELEDNFQDEQGEDTD-RMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STAAM (Chaperone protein clpB OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpB PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.108e-35
Identity = 79/152 (51.97%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    4 EKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA EL+   +  L+ ++  L D  ++    +T+ R +  VVT+ +I  IVS WTGIPV K+   E ++LL + + LHKRV+GQD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H
Sbjct:  495 EKAAELQYGTIPQLEKELRELEDNFQDEQGEDTD-RMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STAAC (Chaperone protein clpB OS=Staphylococcus aureus (strain COL) GN=clpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.108e-35
Identity = 79/152 (51.97%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    4 EKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA EL+   +  L+ ++  L D  ++    +T+ R +  VVT+ +I  IVS WTGIPV K+   E ++LL + + LHKRV+GQD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H
Sbjct:  495 EKAAELQYGTIPQLEKELRELEDNFQDEQGEDTD-RMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.108e-35
Identity = 78/152 (51.32%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +++AGEL         +I  L  K  E+   E     V   VT   I  +VS WTG+PV+K+   E ++LL+MEE L +RV+GQ EAV A+S A+RRAR GL++PNRP+ SF+F GPTGVGK+EL KALA Y F  E AM+R+DMSEFME+H
Sbjct:  497 YQRAGELA------YGRIPELEKKIAEIEANENSGAMVEEAVTANHIAQVVSRWTGVPVDKMLEGEKEKLLRMEEQLGQRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFDDETAMVRIDMSEFMEKH 642          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.447e-35
Identity = 81/155 (52.26%), Postives = 103/155 (66.45%), Query Frame = 1
Query:    4 EKAGELRDREMDLKAQISALVDKGKEMSKA-ETEARDVGPV---VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            E A   +D     + Q   L    K+M+ A E E  D   V   VT  +I  +VS WTGIPV K+   E D+LL+ME+ LH RV+GQ+EA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S EAMIR+DMSEFME+H
Sbjct:  487 EAAQRRQDYAKMSEIQYGVLPQLEKQMALANEVEHHDFKLVQDRVTAEEIAEVVSRWTGIPVNKMLEGERDKLLRMEDELHHRVVGQNEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STAAR (Chaperone protein clpB OS=Staphylococcus aureus (strain MRSA252) GN=clpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.447e-35
Identity = 79/152 (51.97%), Postives = 108/152 (71.05%), Query Frame = 1
Query:    4 EKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA EL+   +  L+ ++  L D  ++  + E   R +  VVT+ +I  IVS WTGIPV K+   E ++LL + + LHKRV+GQD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H
Sbjct:  495 EKAAELQYGTIPQLEKELRELEDNFQD-EQGEDSDRMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKH 645          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB2_STRAW8.485e-3652.98Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_XANCP1.108e-3552.26Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB_STAAW1.108e-3551.97Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAS1.108e-3551.97Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAN1.108e-3551.97Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAM1.108e-3551.97Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAC1.108e-3551.97Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_RHOPA1.108e-3551.32Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_XANAC1.447e-3552.26Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_STAAR1.447e-3551.97Chaperone protein clpB OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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