CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:530..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.447e-35
Identity = 75/148 (50.68%), Postives = 105/148 (70.95%), Query Frame = 1
Query:   13 GELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            G++ + E  L+A   A   +GK M     +       VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV+A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H
Sbjct:  504 GKIPELEKQLEA---ATQSEGKTMRLLRNK-------VTDAEIAEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.447e-35
Identity = 75/148 (50.68%), Postives = 105/148 (70.95%), Query Frame = 1
Query:   13 GELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            G++ + E  L+A   A   +GK M     +       VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV+A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H
Sbjct:  504 GKIPELEKQLEA---ATQSEGKTMRLLRNK-------VTDAEIAEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.890e-35
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S+EAM+R+DMSEFME+H
Sbjct:  531 VTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.890e-35
Identity = 77/148 (52.03%), Postives = 101/148 (68.24%), Query Frame = 1
Query:   22 RDREMDLKAQISALVDKGKEMSKAET---EARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            R RE+  +   +   D   + +K E    + R +   VTE +I  +VS WTG+PV ++   E  +LL MEE LH+RV+GQDEAV A+S A+RR+R GL++PNRPI SF+F GPTGVGK+EL KALA   F  E AM+R+DMSEFMERH
Sbjct:  517 RLRELQARIDEAEKHDDSADQTKEEPGDEKRRLLRKEVTEEEIAEVVSTWTGVPVTRMMETERAKLLVMEERLHQRVVGQDEAVTAVSDAVRRSRSGLQDPNRPIGSFLFLGPTGVGKTELCKALAEVMFDDESAMVRIDMSEFMERH 664          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.890e-35
Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VTE +I  +VS WTGIPV K+   E ++LL+ME  LH RVIGQ+EAV A+S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F +EEAM+R+DMSEFME+H
Sbjct:  531 VTEEEIAEVVSKWTGIPVSKMLEGEREKLLRMETLLHNRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.890e-35
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S+EAM+R+DMSEFME+H
Sbjct:  531 VTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.890e-35
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S+EAM+R+DMSEFME+H
Sbjct:  531 VTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.890e-35
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S+EAM+R+DMSEFME+H
Sbjct:  531 VTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.224e-35
Identity = 73/136 (53.68%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   49 QISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            ++ AL    +++ K    A      VTE DI  +VS WTGIPV K+   E ++LL +EE LH RVIGQD A+ ++S AIRRAR GL +PNRP+ SF+F GP+GVGK+ELAKALA + F S +AM+R+DMSE+ME+H
Sbjct:  496 ELPALEKDVQDLEKKLKSAEFAHMEVTEEDIAAVVSRWTGIPVSKLMEGEREKLLHLEEQLHGRVIGQDRAIVSVSDAIRRARAGLNDPNRPLGSFMFLGPSGVGKTELAKALAEFLFDSSDAMVRIDMSEYMEKH 631          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.224e-35
Identity = 75/155 (48.39%), Postives = 107/155 (69.03%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARD---VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F+KAGEL             +    K+++ AE++      +   VT   +  ++S WTGIPV+++   E ++LL+ME+ + KRV+GQ EAV+AIS+A+RRAR GL++PNRPI SFIF GPTGVGK+EL KALA++ F  + AM+R+DMSEFME+H
Sbjct:  496 FQKAGELA---------YGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKH 641          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_SALTY1.447e-3550.68Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI1.447e-3550.68Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_SHIFL1.890e-3561.26Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_RHOBA1.890e-3552.03Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLPB_PSESM1.890e-3563.06Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_ECOLI1.890e-3561.26Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL61.890e-3561.26Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO571.890e-3561.26Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_DEIRA3.224e-3553.68Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_BRUSU3.224e-3548.39Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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