CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:530..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.224e-35
Identity = 75/155 (48.39%), Postives = 107/155 (69.03%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARD---VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F+KAGEL             +    K+++ AE++      +   VT   +  ++S WTGIPV+++   E ++LL+ME+ + KRV+GQ EAV+AIS+A+RRAR GL++PNRPI SFIF GPTGVGK+EL KALA++ F  + AM+R+DMSEFME+H
Sbjct:  496 FQKAGELA---------YGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.500e-35
Identity = 79/151 (52.32%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    7 KAGELRDREMD-LKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            KA ELR  ++  ++ ++ AL  + +E  K   E R +   VTE +I  IV  WTGIPV K+   E ++LLK+ + LH++VIGQD+AV+ +S A+ RAR G+K+P RPI SFIF GPTGVGK+ELAKALA   F SE+ MIR+DMSE+ME+H
Sbjct:  499 KAAELRHGKIPAVEKELLALETENRE--KTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAYNMFDSEDHMIRIDMSEYMEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.600e-34
Identity = 76/151 (50.33%), Postives = 102/151 (67.55%), Query Frame = 1
Query:   13 GELRDREMDLKAQISALVDKGKEMSKAETEARD---VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            G+L      L  +I  L  +  E S AE +++    V   VT  DI  +VSAWTG+PV K+   ES++LL ME  + KR++GQ  AVKA+S A+RR+R G+ +PNRP  SF+F GPTGVGK+ELAKALA + F  E AM+R+DMSE+ME+H
Sbjct:  494 GDLAKASEILYGEIPELNKQLDEASAAEEDSQGKSMVSEEVTSDDIAEVVSAWTGVPVGKMLEGESEKLLDMENRIGKRLVGQQAAVKAVSDAVRRSRAGISDPNRPTGSFMFLGPTGVGKTELAKALADFLFDDETAMVRIDMSEYMEKH 644          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.090e-34
Identity = 67/111 (60.36%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT  +I  +VS WTGIPV K+   E D+LL+ME  L +RV+GQDEA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H
Sbjct:  531 VTAEEIAEVVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQDEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.090e-34
Identity = 75/160 (46.88%), Postives = 106/160 (66.25%), Query Frame = 1
Query:    4 EKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPV---------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            E+A    D     + +   L    K++S+ ET     G           VTE DI  +++ WTGIPV K+   E ++LL +E  LH+RVIGQ++AV+A++ AI+R+R GL +PNRPIASF+F GPTGVGK+EL+KALA+  F SE A++R+DMSE+ME+H
Sbjct:  488 EQAKRSYDLNKAAELEYGTLAGLQKQLSEKETALAQDGEAGDKSLLREEVTEDDIADVIAKWTGIPVAKLVQSEMEKLLGLEAELHQRVIGQEQAVQAVADAIQRSRAGLSDPNRPIASFLFLGPTGVGKTELSKALASQLFDSEAALVRIDMSEYMEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.090e-34
Identity = 75/150 (50.00%), Postives = 104/150 (69.33%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K G L   + +L+A  + L++     +   T  RD    VTE DI  IV+ WTGIP++K+   E  +LL++E+ LH+RVIGQ +AV A++ AIRRAR G+K+P RPI SF+F GPTGVGK+ELA+ALA   F  E A++R+DMSE+ME+H
Sbjct:  512 KYGRLETLQRELEATEAQLLEL---QAAGGTFLRDQ---VTEADIAEIVAKWTGIPLQKLMASERQKLLQLEQVLHQRVIGQSDAVAAVAAAIRRARAGMKDPARPIGSFLFMGPTGVGKTELARALAEALFDDENALVRIDMSEYMEKH 655          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.730e-34
Identity = 71/151 (47.02%), Postives = 102/151 (67.55%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 453
            FE A ++RD    L+ ++S      K+  K   E   +   + E DI+H++S  T IP++++   ES RL+ MEE LH++V+GQ EA+ +IS+AIRR+R GLK   RP+ SFIF GPTGVGK+ LAK L+ + FG  +A+IR+DMSEFME+
Sbjct:  445 FEDAAKIRDEITSLQEELS------KKEEKCREEREKIETFIEEDDIRHVISEITNIPIKRLLNSESKRLIGMEEELHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGSFIFLGPTGVGKTALAKVLSEFMFGDSDALIRIDMSEFMEK 589          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STAEQ (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.730e-34
Identity = 78/154 (50.65%), Postives = 107/154 (69.48%), Query Frame = 1
Query:    4 EKAGELRDREMDLKAQISALVDKGKEMSKAET---EARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA EL+   +    Q+   + K +E  + ET     R +  VV++ +I  IVS WTGIPV K+   E ++LL + + LHKRV+GQD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LA+  F SE+ MIR+DMSE+ME+H
Sbjct:  495 EKAAELQYGTIP---QLEKELQKFEEAFQDETGEDSERMIREVVSDEEIGDIVSQWTGIPVSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.730e-34
Identity = 74/144 (51.39%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   25 DREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            ++++DL AQ        +EMS  + +       VT+ +I  ++S  TGIPV K+   E D+LL+ME+ LH+RVIGQ+EAV+A++ AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F SE+ M+R+DMSEFME+H
Sbjct:  510 EKQLDLAAQAEM-----QEMSLLKNK-------VTDAEIAEVLSKQTGIPVAKMLEGERDKLLRMEDELHQRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFMFDSEDNMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.730e-34
Identity = 77/154 (50.00%), Postives = 110/154 (71.43%), Query Frame = 1
Query:    1 FEKAGELRDREM-DLKAQISALVDKGKEMSKAET-EARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F+K  EL+  ++ +L+A++ A     +E  ++++ + R +   V   +I  +VS  TGIPV K+   E D+LL+ME+ LHKRV+GQDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H
Sbjct:  494 FDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKH 647          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_BRUME3.224e-3548.39Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_LISIN5.500e-3552.32Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]
CLPB_PROFR1.600e-3450.33Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPB_XYLFT2.090e-3460.36Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_PROMM2.090e-3446.88Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB2_THEEB2.090e-3450.00Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
HLYB_TREHY2.730e-3447.02Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
CLPB_STAEQ2.730e-3450.65Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_PHOPR2.730e-3451.39Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_BORPE2.730e-3450.00Chaperone protein clpB OS=Bordetella pertussis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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