CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.730e-34
Identity = 77/154 (50.00%), Postives = 110/154 (71.43%), Query Frame = 1
Query:    1 FEKAGELRDREM-DLKAQISALVDKGKEMSKAET-EARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F+K  EL+  ++ +L+A++ A     +E  ++++ + R +   V   +I  +VS  TGIPV K+   E D+LL+ME+ LHKRV+GQDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H
Sbjct:  494 FDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.730e-34
Identity = 77/154 (50.00%), Postives = 110/154 (71.43%), Query Frame = 1
Query:    1 FEKAGELRDREM-DLKAQISALVDKGKEMSKAET-EARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            F+K  EL+  ++ +L+A++ A     +E  ++++ + R +   V   +I  +VS  TGIPV K+   E D+LL+ME+ LHKRV+GQDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H
Sbjct:  494 FDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_STAES (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.565e-34
Identity = 79/156 (50.64%), Postives = 107/156 (68.59%), Query Frame = 1
Query:    4 EKAGELR-----DREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA EL+       E +L+    A  D+  E S+     R +  VV++ +I  IVS WTGIPV K+   E ++LL + + LHKRV+GQD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LA+  F SE+ MIR+DMSE+ME+H
Sbjct:  495 EKAAELQYGTIPQLEKELQEFEEAFQDETGEDSE-----RMIREVVSDEEIGDIVSQWTGIPVSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.565e-34
Identity = 72/131 (54.96%), Postives = 100/131 (76.34%), Query Frame = 1
Query:   76 KEMSKAET-EARDVGPV---VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K++++AE+ E +++  +   VT+ +I  ++S  TGIPV K+   E ++LL+MEE LHKRVIGQ EA++A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F  E AM+R+DMSEFME+H
Sbjct:  510 KQLAQAESAEGKEMTLLRYRVTDEEIAEVLSRATGIPVAKMMEGEKEKLLRMEEELHKRVIGQHEAIEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDDENAMVRIDMSEFMEKH 640          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.565e-34
Identity = 78/151 (51.66%), Postives = 105/151 (69.54%), Query Frame = 1
Query:    7 KAGELRDREMD-LKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            KA ELR   +  ++ ++  L  + +E  K   E R +   VTE +I  IV  WTGIPV K+   E ++LLK+ + LH++VIGQD+AV+ +S A+ RAR G+K+P RPI SFIF GPTGVGK+ELAKALA   F SE+ MIR+DMSE+ME+H
Sbjct:  499 KAAELRHGRIPAVEKELLELEAENRE--KTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.565e-34
Identity = 78/151 (51.66%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    7 KAGELRDREMD-LKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            KA ELR  ++  ++ ++  L  + +E  K   E R +   VTE +I  IV  WTGIPV K+   E ++LLK+ + LH++VIGQD+AV+ +S A+ RAR G+K+P RPI SFIF GPTGVGK+ELAKALA   F SE+ MIR+DMSE+ME+H
Sbjct:  499 KAAELRHGKIPAVEKELLELEAENRE--KTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLLKLADELHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.081e-34
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT  +I  +VS WTGIPV K+   E D+LL+ME  L +RV+GQ+EA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H
Sbjct:  531 VTAEEIAEVVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQEEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.081e-34
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT+ +I  ++S  TGIPV K+   E ++LL+ME+ LHKRVIGQ EAV+ ++ AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H
Sbjct:  531 VTDAEIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 6.081e-34
Identity = 76/152 (50.00%), Postives = 106/152 (69.74%), Query Frame = 1
Query:    4 EKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA  LR  ++ +++ ++ A+ +K K       +   V   VTE  I  +V   TGIP+ K+   E ++LL + ETLH+RV+GQDEAV+A+S AI RAR G+++PNRP+ SF+F GPTGVGK+ELAKALA   F SEE M+R+DMSE+ME+H
Sbjct:  498 EKAAALRYGKIPEIEKELKAIEEKAKS-----DDLSLVQESVTEEQIAEVVGRMTGIPITKLVEGEREKLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEYMEKH 644          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_LACLA (Chaperone protein clpB OS=Lactococcus lactis subsp. lactis GN=clpB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.081e-34
Identity = 76/152 (50.00%), Postives = 106/152 (69.74%), Query Frame = 1
Query:    4 EKAGELRDREM-DLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            EKA  LR  ++ +++ ++ A+ +K K       +   V   VTE  I  +V   TGIP+ K+   E ++LL + ETLH+RV+GQDEAV+A+S AI RAR G+++PNRP+ SF+F GPTGVGK+ELAKALA   F SEE M+R+DMSE+ME+H
Sbjct:  498 EKAAALRYGKIPEIEKELKAIEEKAKS-----DDLSLVQESVTEEQITEVVGRMTGIPITKLVEGEREKLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEYMEKH 644          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_BORPA2.730e-3450.00Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB_BORBR2.730e-3450.00Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_STAES3.565e-3450.64Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_PASMU3.565e-3454.96Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_LISMO3.565e-3451.66Chaperone protein clpB OS=Listeria monocytogenes G... [more]
CLPB_LISMF3.565e-3451.66Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_XYLFA6.081e-3459.46Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_VIBCH6.081e-3460.36Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_LACLM6.081e-3450.00Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_LACLA6.081e-3450.00Chaperone protein clpB OS=Lactococcus lactis subsp... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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