CX287077

Overview
NameCX287077
Unique NameCX287077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:530..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_ENTFA (Chaperone protein clpB OS=Enterococcus faecalis GN=clpB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.081e-34
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 1
Query:   70 KGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K  E   A+   + V   VTE +I  +V   TGIPV K+   E ++L+K+ ETLHKRVIGQDEAV A+S A+ R+R GL++PNRP+ SF+F GPTGVGK+ELAKALA   F SE+ M+R+DMSE+ME+H
Sbjct:  516 KELEEKNAKDNVKMVQESVTENEIAQVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKH 644          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPE_LACLM (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 7.942e-34
Identity = 79/152 (51.97%), Postives = 98/152 (64.47%), Query Frame = 1
Query:    1 FEKAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            FEKA   RD+           + K +E+ K E    D+ PV+TE DI+ IV   T IPV  +   E  +L+ + + L   VIGQDEAV  IS+AIRR+RVGL  PNRPI SF+F GPTGVGK+ELAK LA   FGS E+MIR DMSE+ME+H
Sbjct:  378 FEKAAHFRDQ-----------ISKLRELQKQEVTDEDM-PVITEKDIEQIVEQKTQIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKISKAIRRSRVGLGKPNRPIGSFLFVGPTGVGKTELAKQLAKELFGSSESMIRFDMSEYMEKH 517          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.942e-34
Identity = 72/150 (48.00%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKGKEMSKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            K G+L + E  LKA    L ++ KE +K+ +E R +   V   D+  +V+ WTGIPV K+   ES +LL ME++L  RV+GQD A+  ++ AIRRAR  + +PNRPI +F+F GPTGVGK+E  KALA + F  E+A++R+DMSE+ME+H
Sbjct:  498 KYGKLPEAEKKLKA----LEERSKEGAKSSSENRMLKEEVGPEDVAEVVAKWTGIPVSKMLESESQKLLHMEDSLKHRVVGQDHALTIVADAIRRARAEISDPNRPIGTFMFLGPTGVGKTETVKALAEFLFDDEQAVVRIDMSEYMEKH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT+ +I  ++S  TGIPV K+   E ++LL+MEE LHKRVIGQ EAV+ ++ AIRR+R GL +PN+PI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H
Sbjct:  531 VTDNEIAEVLSKQTGIPVSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            VT+ +I  ++S  TGIPV K+   E ++LL+MEE LHKRVIGQ EAV+ ++ AIRR+R GL +PN+PI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H
Sbjct:  531 VTDNEIAEVLSKQTGIPVSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEKH 641          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 67/107 (62.62%), Postives = 86/107 (80.37%), Query Frame = 1
Query:  136 DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +I  +VS  TGIPV K+   E D+LLKMEE LH+RV+GQDEAV+A+S AIRR+R GL +PN+P  SF+F GPTGVGK+EL KALA + F SE+ +IR+DMSE+ME+H
Sbjct:  539 EIAEVVSRMTGIPVSKMMEGERDKLLKMEEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 67/107 (62.62%), Postives = 86/107 (80.37%), Query Frame = 1
Query:  136 DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            +I  +VS  TGIPV K+   E D+LLKMEE LH+RV+GQDEAV+A+S AIRR+R GL +PN+P  SF+F GPTGVGK+EL KALA + F SE+ +IR+DMSE+ME+H
Sbjct:  539 EIAEVVSRMTGIPVSKMMEGERDKLLKMEEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYMEKH 645          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  124 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            V+EV+I  ++S WTGIP+ ++  +E ++LL ME  LH+ VIGQDEAV+ IS AIRR+R GL +P RPI SF+F GPTGVGK+EL KAL+ + F ++ AM+R+DMSEFME+H
Sbjct:  533 VSEVEIAEVLSKWTGIPISRILANEKNKLLNMETILHQLVIGQDEAVRVISNAIRRSRSGLSDPKRPIGSFMFLGPTGVGKTELCKALSQFLFDTDNAMVRIDMSEFMEKH 643          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 79/151 (52.32%), Postives = 105/151 (69.54%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKGKEM-SKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            KA ELR  ++     I   + + +EM +  + E R +   V+E +I  IVS WTGIPV K+   E ++LL++E+ L +RVIGQ+EAV  +S A+ RAR G+K+PNRPI SFIF GPTGVGK+ELAK LA   F SEE MIR+DMSE+ME+H
Sbjct:  500 KAAELRHGKIPA---IEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKH 647          
BLAST of CX287077 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 79/151 (52.32%), Postives = 105/151 (69.54%), Query Frame = 1
Query:    7 KAGELRDREMDLKAQISALVDKGKEM-SKAETEARDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 456
            KA ELR  ++     I   + + +EM +  + E R +   V+E +I  IVS WTGIPV K+   E ++LL++E+ L +RVIGQ+EAV  +S A+ RAR G+K+PNRPI SFIF GPTGVGK+ELAK LA   F SEE MIR+DMSE+ME+H
Sbjct:  500 KAAELRHGKIPA---IEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKH 647          
The following BLAST results are available for this feature:
BLAST of CX287077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_ENTFA6.081e-3455.81Chaperone protein clpB OS=Enterococcus faecalis GN... [more]
CLPE_LACLM7.942e-3451.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_BDEBA7.942e-3448.00Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
CLPB_VIBVY1.037e-3360.36Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_VIBVU1.037e-3360.36Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_NEIMB1.037e-3362.62Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_NEIMA1.037e-3362.62Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_BLOFL1.037e-3358.56Chaperone protein clpB OS=Blochmannia floridanus G... [more]
CLPB_BACCR1.037e-3352.32Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BACC11.037e-3352.32Chaperone protein clpB OS=Bacillus cereus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC01004D10SK Veg1 Citrus clementina cDNA clone C01004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287077 ID=CX287077; Name=CX287077; organism=Citrus clementina; type=EST; length=457bp
TTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCA
GATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTG
AAGCACGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATT
GTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATC
TGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTC
AGGACGAAGCTGTCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTT
GGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCC
AACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACT
TTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAA
AGACACA
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