CX287081

Overview
NameCX287081
Unique NameCX287081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10194 contig Ccv1_Contig10194:119..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_BOVIN (40S ribosomal protein S26 OS=Bos taurus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 8.309e-18
Identity = 41/89 (46.07%), Postives = 50/89 (56.18%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYCXXXXXXXXXXXXXXXXXXXXXEPPQRFMRRDDVPK 269
            IRC+NC +C PKDKAIK+F++RNI E AAVRD+ EA V+D Y LPKLY K+ YC                      PP RF      P+
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPR 109          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_ANOGA (40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.309e-18
Identity = 40/85 (47.06%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYCXXXXXXXXXXXXXXXXXXXXXEPPQRFMRRD 257
            +RC+NC +C PKDKAIK+F++RNI E AAVRD+ +A VY  Y LPKLYAK+ YC                      PPQR   +D
Sbjct:   21 VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQRSFPKD 105          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_SHEEP (40S ribosomal protein S26 OS=Ovis aries GN=RPS26 PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.085e-17
Identity = 41/89 (46.07%), Postives = 50/89 (56.18%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYCXXXXXXXXXXXXXXXXXXXXXEPPQRFMRRDDVPK 269
            IRC+NC +C PKDKAIK+F++RNI E AAVRD+ EA V+D Y LPKLY K+ YC                      PP RF      P+
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPR 109          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_DROME (40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.417e-17
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYC 164
            +RC+NC +C PKDKAIK+F++RNI E AAVRD+ EA ++D Y LPKLYAK+ YC
Sbjct:   21 VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYC 74          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_CRICR (40S ribosomal protein S26 OS=Cricetus cricetus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.417e-17
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYCXXXXXXXXXXXXXXXXXXXXXEPPQRFMRRDDVPK 269
            IRC+NC +C PKDKAIK+F++RNI E AAVRD+ EA V+D Y LPKLY ++ YC                      PP RF      P+
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPR 109          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.034e-17
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYC 164
            IRC+NC +C PKDKAIK+F++RNI E AAVRD+ +A VY+ Y LPKLYAK+ YC
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYC 74          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.034e-17
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYC 164
            IRC+NCG+C PKDKAIK+F+VRNI   AAVRD+ +A  YD Y LPKLY K+ YC
Sbjct:   21 IRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYC 74          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_NEUCR (40S ribosomal protein S26E OS=Neurospora crassa GN=rps-26 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.047e-16
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYC 164
            IRCSNC +C PKDKAIKRF +RN+ E AA+RD+ +A V+  YT+PK+Y K+QYC
Sbjct:   21 IRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQYC 74          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26L_HUMAN (Putative 40S ribosomal protein S26-like 1 OS=Homo sapiens GN=RPS26P11 PE=5 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.673e-16
Identity = 39/89 (43.82%), Postives = 48/89 (53.93%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYCXXXXXXXXXXXXXXXXXXXXXEPPQRFMRRDDVPK 269
            IRC+NC +C P DKAIK+F++RNI E AAVRD+ E  V+D Y LPKLY K+ YC                      PP RF      P+
Sbjct:   21 IRCTNCVRCVPTDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREACKDRTPPPRFRPAGAAPR 109          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_SCHCO (40S ribosomal protein S26 OS=Schizophyllum commune GN=RPS26 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.041e-15
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYC 164
            +RCSNC +C  KDKAIKRF VRN+ E AA+RD+ +A VY  Y +PKLY K+ YC
Sbjct:   21 VRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVYPEYAIPKLYIKIAYC 74          
The following BLAST results are available for this feature:
BLAST of CX287081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS26_BOVIN8.309e-1846.0740S ribosomal protein S26 OS=Bos taurus GN=RPS26 P... [more]
RS26_ANOGA8.309e-1847.0640S ribosomal protein S26 OS=Anopheles gambiae GN=... [more]
RS26_SHEEP1.085e-1746.0740S ribosomal protein S26 OS=Ovis aries GN=RPS26 P... [more]
RS26_DROME2.417e-1764.8140S ribosomal protein S26 OS=Drosophila melanogast... [more]
RS26_CRICR2.417e-1744.9440S ribosomal protein S26 OS=Cricetus cricetus GN=... [more]
RS26_OCTVU7.034e-1766.6740S ribosomal protein S26 OS=Octopus vulgaris GN=R... [more]
RS26_BRUPA7.034e-1766.6740S ribosomal protein S26 (Fragment) OS=Brugia pah... [more]
RS26_NEUCR2.047e-1662.9640S ribosomal protein S26E OS=Neurospora crassa GN... [more]
RS26L_HUMAN2.673e-1643.82Putative 40S ribosomal protein S26-like 1 OS=Homo ... [more]
RS26_SCHCO5.041e-1561.1140S ribosomal protein S26 OS=Schizophyllum commune... [more]

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Properties
Property NameValue
Genbank descriptionC01004E02SK Veg1 Citrus clementina cDNA clone C01004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287081 ID=CX287081; Name=CX287081; organism=Citrus clementina; type=EST; length=269bp
TCATCCGCTGCTCTAACTGCGGCAAATGCTGCCCTAAGGACAAGGCGATT
AAGAGGTTTTTGGTGAGGAACATTGCTGAGCAAGCTGCTGTTAGGGATGT
TCAGGAGGCGCGTGTTTATGACGGTTACACTCTTCCTAAGTTATATGCTA
AGATGCAGTACTGCGTCTCGAGTGCGATCCACTCTCATGTGGTGAGAGTT
CGGTCCCGTACTAACAGGAGGATCCGCGAGCCCCCGCAACGCTTCATGCG
CAGGGATGATGTCCCAAAG
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