CX287100

Overview
NameCX287100
Unique NameCX287100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 37/113 (32.74%), Postives = 64/113 (56.64%), Query Frame = -1
Query:  203 KLILLDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIP 538
            ++I L+L+ + +  P+PP+IG L  LR+L+L+NN+L G IP  L N   +  + + +NY   P P +   +  L  L +  N L    P+ + +  KL   ++S+N ++G IP
Sbjct:   75 RVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIP 187          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: CYAA_PODAN (Adenylate cyclase OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 56/170 (32.94%), Postives = 78/170 (45.88%), Query Frame = -1
Query:    5 SNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 514
            +NN    +P   GY S L +L   NN L       L NL  +  L +  N L+   P +F+  A L  L +  NLL  FP F+A+   L+ LDLS N I   +P + +  + +LE L +T N   G +    K    LR L +  N ++    D I  L  LEIL    N
Sbjct:  810 NNNEARALPKSFGYASRLTMLDASNNRLESLESAALHNLTGLLKLNLANNKLKQL-PREFEAFAVLRTLNISSNLLNNFPPFLAKLENLVDLDLSFNTIQS-LP-DNVGQMTSLERLVITNNELSGSLPPSFKNLRSLRELDIKYNAISNI--DVISQLPKLEILSATRN 974          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 55/171 (32.16%), Postives = 82/171 (47.95%), Query Frame = -1
Query:   47 LLDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLE-KFPSFIAECSKLM---------FLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEI 529
            +LDLSSNNL+  +P      S L VL + NNS++G +P    + Q   ++ + +N      PV F   ASL  L L  N LE   P   +  S+L+          LDLS N + G +P   +  +E ++ LNL  N   GE+  ++     L  L L  N   G IP+++
Sbjct:  368 VLDLSSNNLSGSLPNFTSAFSRLSVLSIRNNSVSGSLPSLWGDSQ-FSVIDLSSNKFSGFIPVSFFTFASLRSLNLSRNNLEGPIPFRGSRASELLVLNSYPQMELLDLSTNSLTGMLP-GDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKL 536          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: SUR8_CULQU (Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 63/187 (33.69%), Postives = 93/187 (49.73%), Query Frame = -1
Query:    5 IPAGIVNATKLILLDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 565
            IP  + + T LI   L  N +++ +P EIG LS L+ L L  NSLT  +P  L NL+ + +L +  N L +   V +K + +LT L+L +N ++     +   S L  L L +N I  H     + HL NL  L+L+ N  +  +   I     L  L L  N L   IP+ IG L+NL+ L    N
Sbjct:  162 IPPSVKDCTSLIEFYLYGNKISS-LPVEIGCLSNLKTLALNENSLT-SLPDSLQNLKALKVLDLRHNKLSEIPDVIYK-LHTLTTLYLRFNRIKVVGDNLKNLSSLTMLSLRENKI--HELPAAIGHLRNLTTLDLSHNHLK-HLPEAIGNCVNLTALDLQHNDLL-DIPETIGNLANLQRLGLRYN 341          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: LGR4_HUMAN (Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Homo sapiens GN=LGR4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 57/175 (32.57%), Postives = 78/175 (44.57%), Query Frame = -1
Query:    5 LDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFPSF-IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 526
            L L+ N+L+   P  +  L EL+VL L NN L       +  L  +  LR+ AN++       F+G+  L HLWLD N L + P   ++    L  L L+ N I   IP    T+L +L  L+L  N               L  L L  N L G  P  I  L +L+ L FH N
Sbjct:   86 LQLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLSALQSLRLDANHITSVPEDSFEGLVQLRHLWLDDNSLTEVPVHPLSNLPTLQALTLALNKI-SSIPDFAFTNLSSLVVLHLHNNKIRSLSQHCFDGLDNLETLDLNYNNL-GEFPQAIKALPSLKELGFHSN 258          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: SHOC2_MOUSE (Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = -1
Query:    5 IPAGIVNATKLILLDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 565
            +P  +   T+L  L L SN L + +P E+G L  L  L L  NSLT  +P  L NL+ + +L +  N L +   V ++ + SLT L+L +N +      I    KL  L + +N I   +P E +  L NL  L++  N  E  + +EI    ++ +L L  N L   +PD IG LS+L  L    N
Sbjct:  115 LPPSVKELTQLTELYLYSNKLQS-LPAEVGCLVNLMTLALSENSLT-SLPDSLDNLKKLRMLDLRHNKLREIPSVVYR-LDSLTTLYLRFNRITTVEKDIKNLPKLSMLSIRENKIK-QLPAE-IGELCNLITLDVAHNQLE-HLPKEIGNCTQITNLDLQHNDLL-DLPDTIGNLSSLNRLGLRYN 294          

HSP 2 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = -1
Query:    5 VGSIPAGIVNATKLIL-LDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 574
            +  IP GI +  K++  L++  N LT+ +P + G  + +  L L  N LT +IP  +S                        G+ SL  L L  NLL+K P  +    KL  LDL +N +   +P  ++ +L++L+ L LT N     + R I     L HL LG+N LT  +P+EIG L NLE L  ++N
Sbjct:  367 INKIPFGIFSRAKVLSKLNMKDNQLTS-LPLDFGTWTSMVELNLATNQLT-KIPEDVS------------------------GLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLES-LP-NEIAYLKDLQKLVLTNNQL-STLPRGIGHLTNLTHLGLGENLLT-HLPEEIGTLENLEELYLNDN 527          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: LGR6_HUMAN (Leucine-rich repeat-containing G-protein coupled receptor 6 OS=Homo sapiens GN=LGR6 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 57/175 (32.57%), Postives = 80/175 (45.71%), Query Frame = -1
Query:    5 LDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 526
            L LS N+L++        L  L++L+L NN L G     L  L ++  LR+ AN +       F+G++SL HLWLD N L + P   +     L  + L+ N I  HIP     +L +L  L+L  N  +       +    L  L L  NKL    P  I  L  L+ L FH N
Sbjct:   95 LRLSGNHLSHIPGQAFSGLYSLKILMLQNNQLGGIPAEALWELPSLQSLRLDANLISLVPERSFEGLSSLRHLWLDDNALTEIPVRALNNLPALQAMTLALNRI-SHIPDYAFQNLTSLVVLHLHNNRIQHLGTHSFEGLHNLETLDLNYNKLQ-EFPVAIRTLGRLQELGFHNN 267          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: SHOC2_RAT (Leucine-rich repeat protein SHOC-2 OS=Rattus norvegicus GN=Shoc2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = -1
Query:    5 VGSIPAGIVNATKLIL-LDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 574
            +  IP GI +  K++  L++  N LT+ +P + G  + +  L L  N LT +IP  +S                        G+ SL  L L  NLL+K P  +    KL  LDL +N +   +P  ++ +L++L+ L LT N     + R I     L HL LG+N LT  +P+EIG L NLE L  ++N
Sbjct:  367 INKIPFGIFSRAKVLSKLNMKDNQLTS-LPLDFGTWTSMVELNLATNQLT-KIPEDVS------------------------GLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLES-LP-NEIAYLKDLQKLVLTNNQLT-TLPRGIGHLTNLTHLGLGENLLT-HLPEEIGTLENLEELYLNDN 527          

HSP 2 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = -1
Query:    5 IPAGIVNATKLILLDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 565
            +P  +   T+L  L L SN L + +P E+G L  L  L L  NSLT  +P  L NL+ + +L +  N L +   V ++ + SLT L+L +N +      +    +L  L + +N I   +P E +  L NL  L++  N  E  + +EI    ++ +L L  N+L   +PD IG LS+L  L    N
Sbjct:  115 LPPSVKELTQLTELYLYSNKLQS-LPAEVGCLVNLMTLALSENSLT-SLPDSLDNLKKLRMLDLRHNKLREIPSVVYR-LDSLTTLYLRFNRITAVEKDVRNLPRLSTLSIRENKIK-QLPAE-IGELCNLITLDVAHNQLE-HLPKEIGNCTQITNLDLQHNELL-DLPDTIGNLSSLNRLGLRYN 294          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: LGR4_MOUSE (Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Mus musculus GN=Lgr4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 56/175 (32.00%), Postives = 79/175 (45.14%), Query Frame = -1
Query:    5 LDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNLFEGEIAREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 526
            L L+ N+L+   P  +  L EL+VL L NN L       +  L  +  LR+ AN++       F+G+  L HLWLD N+L + P   ++    L  L L+ N I   IP    T+L +L  L+L  N  +            L  L L  N L    P  I  L +L+ L FH N
Sbjct:   86 LQLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLSALQSLRLDANHITSVPEDSFEGLVQLRHLWLDDNILTEVPVRPLSNLPTLQALTLALNNI-SSIPDFAFTNLSSLVVLHLHNNKIKSLSQHCFDGLDNLETLDLNYNNL-DEFPQAIKALPSLKELGFHSN 258          
BLAST of CX287100 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = -1
Query:  146 KLILLDLSSNNLTNPIPPEIGYLSELRVLLLYNNSLTGQIPHQLSNLQNVWLLRIGANYLEDPDPVKFKGMASLTHLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNL 538
            ++I L L+ + L  P+PPE+G L +LR+L+L+NN+L   IP  L N   +  + +  NY+    P +   ++ L +L L  N L    P+ + +  +L   ++S+N ++G IP + L    + +  N  +NL
Sbjct:   74 RVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNFLVGKIPSDGLLARLSRDSFNGNRNL 205          
The following BLAST results are available for this feature:
BLAST of CX287100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
FEI1_ARATH4.552e-1232.74LRR receptor-like serine/threonine-protein kinase ... [more]
CYAA_PODAN5.945e-1232.94Adenylate cyclase OS=Podospora anserina PE=3 SV=1[more]
Y5020_ARATH7.765e-1232.16Probable inactive receptor kinase At5g10020 OS=Ara... [more]
SUR8_CULQU7.765e-1233.69Leucine-rich repeat protein soc-2 homolog OS=Culex... [more]
LGR4_HUMAN1.014e-1132.57Leucine-rich repeat-containing G-protein coupled r... [more]
SHOC2_MOUSE2.951e-1133.16Leucine-rich repeat protein SHOC-2 OS=Mus musculus... [more]
LGR6_HUMAN2.951e-1132.57Leucine-rich repeat-containing G-protein coupled r... [more]
SHOC2_RAT3.854e-1132.46Leucine-rich repeat protein SHOC-2 OS=Rattus norve... [more]
LGR4_MOUSE3.854e-1132.00Leucine-rich repeat-containing G-protein coupled r... [more]
FEI2_ARATH3.854e-1130.30LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC01004F11SK Veg1 Citrus clementina cDNA clone C01004F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287100 ID=CX287100; Name=CX287100; organism=Citrus clementina; type=EST; length=616bp
GGAAATTCTCATGGAATTCAAGTATTTCAAGGTTTGATAGGAGCCCTATT
TCATCAGGTATTGTACCGGTAAGCTTGTTTTGCCCAAGCTTCAGGTGTCG
AAGCTTAGGAAATGTTTTAATTTCCCGGGCAATCTCTCCTTCAAACAAAT
TCTTTGTTAGGTTCAGATATTCGAGGTTTTCCAGATGAGTCAGTTGCTCT
ATCGGAATATGACCCATAATTAGATTATCAGAAAGATCGAGAAACATCAG
CTTCGAGCATTCAGCTATAAACGAGGGAAATTTCTCCAAAAGATTATAGT
CAAGCCAAAGATGTGTTAAAGATGCCATACCCTTAAACTTGACTGGGTCA
GGATCCTCCAGGTAGTTAGCACCAATTCTTAGCAGCCACACGTTCTGTAG
GTTGCTAAGTTGATGTGGAATTTGACCTGTGAGTGAATTATTGTAGAGAA
GAAGGACTCGGAGTTCTGAAAGGTATCCAATTTCTGGAGGTATTGGATTT
GTGAGATTATTGCTACTCAAATCAAGTAAGATGAGCTTTGTTGCATTCAC
AATTCCAGCCGGAATACTTCCTACCAAATTGTTCATATTGAGATTGAGGG
CAGTGAGATTAGGAAA
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