CX287101
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM0 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9301) GN=rlmN PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17 Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG + ++L+ +A+D GQ +RG+Q+++ IY + K K I+ LP FR L++ G+ V L I A DGT+KLL+ EDN IE VGIP E RLTAC+SSQV Sbjct: 4 LLGSTIKDLENVALDYGQAGFRGRQIYNWIYNYRNKKKNIDQIEVLPLDFRKRLKDDGFKVSDLSIHERNLANDGTLKLLLSTEDNESIECVGIPTE-----KRLTACLSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNPW (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain WH7803) GN=rlmN PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17 Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 136 ANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 + LLG+ EL++ AV GQ ++RG+QLH +Y + ++++ LP+++R LQ+ G +GRL A D T KLL+ +D +ETVGIP + RLT CVSSQV Sbjct: 7 SKTLLGLGASELERWAVSQGQSAFRGRQLHDWLYAKGACDLQDITVLPKAWRASLQDKGVIIGRLKEQDRKVAGDATTKLLLGTDDGETLETVGIPTD-----QRLTVCVSSQV 115
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROMS (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain AS9601) GN=rlmN PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17 Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S +L+ +A+D GQ ++RG+Q+++ IY + K K I+ LP FR L+ G+ V L I A DGT+KLL+ EDN IE VGIP E RLTAC+SSQV Sbjct: 4 LLGSSINDLENVALDYGQAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKLKVDGFKVSELVIKERNLANDGTLKLLLSTEDNESIECVGIPTE-----KRLTACLSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM5 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9515) GN=rlmN PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17 Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S ++L+ +A++ GQ ++RG+Q++ +Y K + K I+ LP +FRN L++ G+ G L + A DGT+KLL+ DN +E VGIP E RLTAC+SSQV Sbjct: 4 LLGCSVKDLENVALNYGQAAFRGRQIYSWLYNYKNRSKSIDEINVLPLNFRNQLKKEGFIFGELILKEKYLANDGTLKLLLNTRDNESVECVGIPTE-----KRLTACLSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROMP (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rlmN PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17 Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S ++L+K+A++ GQ ++RG+Q+++ +Y K + K I+ LP FR+ L+ + G L + A DGT+KLL+ DN +E VGIP E RLTAC+SSQV Sbjct: 4 LLGCSVKDLEKIALNYGQAAFRGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQLKNEAFLFGELTLKEKYLATDGTLKLLLNTRDNESVECVGIPTE-----KRLTACLSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROMM (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9313) GN=rlmN PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17 Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S EL+ AV GQ ++RG+QLH +Y + + E LP+S+R LQ+ G T+GRL A D T KLL+ D IE+VGIP + RLT C+SSQV Sbjct: 13 LLGCSATELEGWAVAEGQPAFRGRQLHEWLYAKGARSFEAITVLPKSWRLSLQQRGITIGRLLEVNRAVAVDDTTKLLLATVDGETIESVGIPTQ-----QRLTVCLSSQV 118
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM9 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9312) GN=rlmN PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17 Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S ++L+ +A+D GQ ++RG+Q++ IY + K K I+ LP FR L++ G+ V L A DGT+KLL+ DN IE VGIP E RLTAC+SSQV Sbjct: 4 LLGSSIKDLENIALDYGQAAFRGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKLKDDGFKVSELSFQEKKLANDGTLKLLLSTNDNESIECVGIPTE-----KRLTACLSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. GN=rlmN PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16 Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S L+ AV GQ +YRG+QLH IY++ ++ +E P+++R +Q + VGR I + A DGTVK L+ L D +LIETVGIP RLT CVSSQV Sbjct: 8 LLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAVQ--SYPVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPT-----AKRLTVCVSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM3 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9303) GN=rlmN PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16 Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S EL+ AV GQ ++RG+QLH +Y + + + LP+S+R LQ+ G T+GRL A D T KLL+ D IE+VGIP + RLT C+SSQV Sbjct: 13 LLGCSATELESWAVAEGQPAFRGRQLHDWLYAKGARSFDAITVLPKSWRISLQQRGLTIGRLLEVNRAVAVDDTTKLLLATVDGETIESVGIPTQ-----QRLTVCLSSQV 118
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_ACAM1 (Ribosomal RNA large subunit methyltransferase N OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 8.630e-16 Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S+ +L A Q +YRG+Q+H IY++ V + + LP+ +R ++ + VGR I A DGTVK L+KL D ++IETVGIP + RLT CVSSQV Sbjct: 13 LLGASKAQLTHWAQTYQQPAYRGQQVHQWIYQKGVHSLSDITVLPKQWRTEIADI--PVGRSQIHHRSAAQDGTVKYLLKLADGQIIETVGIPTQ-----KRLTVCVSSQV 116 The following BLAST results are available for this feature:
BLAST of CX287101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287101 ID=CX287101; Name=CX287101; organism=Citrus clementina; type=EST; length=477bpback to top |