CX287101
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_ANAVT (Ribosomal RNA large subunit methyltransferase N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rlmN PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.127e-15 Identity = 52/135 (38.52%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 73 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 +S TP +L+ SS + P + LLG S EL GQ +YRGKQLH IY + V+ + + + +R + + +GR I A+DGTVK L++L D ++ETVGIP + RLT CVS+QV Sbjct: 1 MSATPVTQLTPSSQPQQPCLP---LLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVETVGIPTD-----KRLTVCVSTQV 125
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP2 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rlmN PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1 Query: 139 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 +VLLG S EL GQ +YRGKQL++ +Y++ + ++ P+++R Q + VGR I TA DGT K L++L D +IETVGIP E RLT CVSSQV Sbjct: 4 DVLLGKSLPELTDWIETTGQPAYRGKQLYNWLYQKGIHDLSEITVFPKAWRE--QMGTYPVGRSQIHHQRTAPDGTRKYLLQLHDGLIIETVGIPTE-----KRLTVCVSSQV 109
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNE7 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus elongatus (strain PCC 7942) GN=rlmN PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15 Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 1 Query: 133 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 DA LLG S ELQ V GQ SYR KQL+ +Y+R + + P+++R LQ VGR I + GT+K L++L D +IE VGIP D RLT CVSSQ+ Sbjct: 13 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGTIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQL 120
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_ANASP (Ribosomal RNA large subunit methyltransferase N OS=Anabaena sp. (strain PCC 7120) GN=rlmN PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 2.511e-15 Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 1 Query: 73 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 +S TP +L+ SS + P + LLG S EL GQ +YRGKQLH IY + V+ + + + +R + + +GR I A+DGTVK L++L D ++E VGIP + RLT CVS+QV Sbjct: 1 MSATPVTQLTPSSQPQQP---CSPLLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTD-----KRLTVCVSTQV 125
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Ribosomal RNA large subunit methyltransferase N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 3.279e-15 Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKG---PMRLTACVSSQV 477 LLG S EL GQ +YRGKQLH IY + V+ + + + +R ++ E +GR + A DGTVK L++L D ++IETVGIP E+G RLT CVS+QV Sbjct: 24 LLGASVAELSAWVQQQGQPAYRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAEI--PIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQV 135
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.283e-15 Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 1 Query: 142 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 VLLG S EL+ GQ YRG+QLH +Y++ + ++ P+ +R L + +GR I A DGTVKLL+ L D IETVGIP D RLT CVSSQV Sbjct: 2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV--EIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQV 106
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP6 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rlmN PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 5.594e-15 Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 1 Query: 133 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 DA LLG S ELQ V GQ SYR KQL+ +Y+R + + P+++R LQ VGR I + G++K L++L D +IE VGIP D RLT CVSSQ+ Sbjct: 3 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGSIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQL 110
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_GLOVI (Ribosomal RNA large subunit methyltransferase N OS=Gloeobacter violaceus GN=rlmN PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14 Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S +EL+ GQ +YR +QLH +Y+R V+ + P+++R + VGR + R AADGT+K L+ D +ETVGIP + RLT CVSSQV Sbjct: 5 LLGQSAEELRIWVESQGQPAYRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHSV--PVGRSQVVRQSAAADGTIKYLLAGADGETVETVGIPAAE-----RLTVCVSSQV 108
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_MICAN (Ribosomal RNA large subunit methyltransferase N OS=Microcystis aeruginosa (strain NIES-843) GN=rlmN PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14 Identity = 48/111 (43.24%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LL S +EL D GQ +YRGKQLH +Y++ V + + PQ +R+ + A + +GR I A D T K L+KL D +IE VGIP E RLT CVSSQV Sbjct: 3 LLAKSLEELTDWVKDQGQPAYRGKQLHQWLYEKGVHSLADISVFPQEWRSKM--ADYPIGRSLIHYRSVAPDRTRKYLLKLADGLIIEAVGIPSE-----KRLTVCVSSQV 106
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_TRIEI (Ribosomal RNA large subunit methyltransferase N OS=Trichodesmium erythraeum (strain IMS101) GN=rlmN PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 6.185e-14 Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG+S +L + GQ +YRGKQL+ IY++ K + + + +R ++ + + +GR I A D TVK L+KL D +IETVGIP RLT CVSSQV Sbjct: 13 LLGLSLAKLTEWVQQQGQPAYRGKQLYQWIYQKGAKSLADITVFSKQWREEI--SNFPIGRSVIHHRSVAPDATVKYLLKLSDGNIIETVGIPTY-----KRLTVCVSSQV 116 The following BLAST results are available for this feature:
BLAST of CX287101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287101 ID=CX287101; Name=CX287101; organism=Citrus clementina; type=EST; length=477bpback to top |