CX287101

Overview
NameCX287101
Unique NameCX287101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287101_ssr105 microsatellite CX287101_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2991 contig Ccv1_Contig2991:100..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_ANAVT (Ribosomal RNA large subunit methyltransferase N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rlmN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.127e-15
Identity = 52/135 (38.52%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   73 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            +S TP  +L+ SS  + P +    LLG S  EL       GQ +YRGKQLH  IY + V+ + +     + +R  + +    +GR  I     A+DGTVK L++L D  ++ETVGIP +      RLT CVS+QV
Sbjct:    1 MSATPVTQLTPSSQPQQPCLP---LLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVETVGIPTD-----KRLTVCVSTQV 125          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP2 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rlmN PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  139 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            +VLLG S  EL       GQ +YRGKQL++ +Y++ + ++      P+++R   Q   + VGR  I    TA DGT K L++L D  +IETVGIP E      RLT CVSSQV
Sbjct:    4 DVLLGKSLPELTDWIETTGQPAYRGKQLYNWLYQKGIHDLSEITVFPKAWRE--QMGTYPVGRSQIHHQRTAPDGTRKYLLQLHDGLIIETVGIPTE-----KRLTVCVSSQV 109          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNE7 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus elongatus (strain PCC 7942) GN=rlmN PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  133 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            DA  LLG S  ELQ   V  GQ SYR KQL+  +Y+R +  +      P+++R  LQ     VGR  I     +  GT+K L++L D  +IE VGIP  D     RLT CVSSQ+
Sbjct:   13 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGTIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQL 120          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_ANASP (Ribosomal RNA large subunit methyltransferase N OS=Anabaena sp. (strain PCC 7120) GN=rlmN PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.511e-15
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   73 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            +S TP  +L+ SS  + P    + LLG S  EL       GQ +YRGKQLH  IY + V+ + +     + +R  + +    +GR  I     A+DGTVK L++L D  ++E VGIP +      RLT CVS+QV
Sbjct:    1 MSATPVTQLTPSSQPQQP---CSPLLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTD-----KRLTVCVSTQV 125          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Ribosomal RNA large subunit methyltransferase N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.279e-15
Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKG---PMRLTACVSSQV 477
            LLG S  EL       GQ +YRGKQLH  IY + V+ + +     + +R ++ E    +GR  +     A DGTVK L++L D ++IETVGIP   E+G     RLT CVS+QV
Sbjct:   24 LLGASVAELSAWVQQQGQPAYRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAEI--PIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQV 135          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.283e-15
Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  142 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            VLLG S  EL+      GQ  YRG+QLH  +Y++  + ++     P+ +R  L +    +GR  I     A DGTVKLL+ L D   IETVGIP  D     RLT CVSSQV
Sbjct:    2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV--EIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQV 106          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP6 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.594e-15
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  133 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            DA  LLG S  ELQ   V  GQ SYR KQL+  +Y+R +  +      P+++R  LQ     VGR  I     +  G++K L++L D  +IE VGIP  D     RLT CVSSQ+
Sbjct:    3 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGSIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQL 110          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_GLOVI (Ribosomal RNA large subunit methyltransferase N OS=Gloeobacter violaceus GN=rlmN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S +EL+      GQ +YR +QLH  +Y+R V+ +      P+++R  +      VGR  + R   AADGT+K L+   D   +ETVGIP  +     RLT CVSSQV
Sbjct:    5 LLGQSAEELRIWVESQGQPAYRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHSV--PVGRSQVVRQSAAADGTIKYLLAGADGETVETVGIPAAE-----RLTVCVSSQV 108          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_MICAN (Ribosomal RNA large subunit methyltransferase N OS=Microcystis aeruginosa (strain NIES-843) GN=rlmN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 48/111 (43.24%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LL  S +EL     D GQ +YRGKQLH  +Y++ V  + +    PQ +R+ +  A + +GR  I     A D T K L+KL D  +IE VGIP E      RLT CVSSQV
Sbjct:    3 LLAKSLEELTDWVKDQGQPAYRGKQLHQWLYEKGVHSLADISVFPQEWRSKM--ADYPIGRSLIHYRSVAPDRTRKYLLKLADGLIIEAVGIPSE-----KRLTVCVSSQV 106          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_TRIEI (Ribosomal RNA large subunit methyltransferase N OS=Trichodesmium erythraeum (strain IMS101) GN=rlmN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.185e-14
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG+S  +L +     GQ +YRGKQL+  IY++  K + +     + +R ++  + + +GR  I     A D TVK L+KL D  +IETVGIP        RLT CVSSQV
Sbjct:   13 LLGLSLAKLTEWVQQQGQPAYRGKQLYQWIYQKGAKSLADITVFSKQWREEI--SNFPIGRSVIHHRSVAPDATVKYLLKLSDGNIIETVGIPTY-----KRLTVCVSSQV 116          
The following BLAST results are available for this feature:
BLAST of CX287101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RLMN_ANAVT1.127e-1538.52Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNP21.923e-1543.36Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNE71.923e-1542.61Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ANASP2.511e-1537.78Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_NOSP73.279e-1542.11Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEEB4.283e-1543.75Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNP65.594e-1541.74Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GLOVI1.246e-1440.54Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_MICAN4.735e-1443.24Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_TRIEI6.185e-1440.54Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC01004F12SK Veg1 Citrus clementina cDNA clone C01004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287101 ID=CX287101; Name=CX287101; organism=Citrus clementina; type=EST; length=477bp
ATGACTCTGCTTCGGCAAGTGATCTCTGCTCCCGTAGCACATGCGGTGGT
GCTTTCTCGCTCCTGCCTTGCAGTTTCTGTGACCCCGCGGCGCAAGTTAT
CTGTTTCTTCTTCTTCACGTGCCCCTCGCGTGGACGCCAACGTGCTCCTT
GGCATGTCCGAGCAGGAGCTTCAAAAACTCGCCGTCGACCTCGGCCAGCA
AAGTTACAGAGGGAAGCAGCTTCATCATCTAATTTACAAAAGAAAGGTCA
AAGAAATTGAAAATTTTATTCAACTGCCTCAGTCCTTCAGAAATGATCTC
CAAGAAGCTGGATGGACGGTTGGTCGCTTGCCGATTTTTCGCACGGTCAC
TGCAGCTGATGGAACTGTTAAATTGCTAATAAAGCTGGAAGACAACAGAT
TGATTGAAACTGTTGGCATACCAGTTGAAGACGAGAAAGGTCCCATGCGT
CTTACCGCTTGTGTGTCATCGCAGGTA
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