CX287101

Overview
NameCX287101
Unique NameCX287101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287101_ssr105 microsatellite CX287101_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2991 contig Ccv1_Contig2991:100..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_BACFN (Ribosomal RNA large subunit methyltransferase N OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rlmN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLGM+  ELQ +  DLG  ++  KQ+   +Y +KV  I+    L    R +L +  + +G       + + DGTVK L ++ DN  +E V IP ED     R T CVSSQV
Sbjct:    6 LLGMTLTELQSVTKDLGMPAFAAKQIASWLYDKKVTSIDEMTNLSLKHR-ELLKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHFVEAVYIPDED-----RATLCVSSQV 110          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SALRD (Ribosomal RNA large subunit methyltransferase N OS=Salinibacter ruber (strain DSM 13855) GN=rlmN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 47/118 (39.83%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  127 RVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKG-PMRLTACVSSQV 477
            RVD   L  M    L+    + G   YRG QL + +Y + V + +    LP+  R  LQ    TV  + I     AAD TVK L +L   R  ETV IP  DE+G   RLT CVSS+V
Sbjct:   17 RVD---LKTMGRAGLKDFVAEHGAPRYRGDQLFNWVYGKGVSDFDRMSNLPKRMRRGLQRDA-TVEDIEIVEQQQAADRTVKALFELPSGREAETVLIPAIDERGEARRLTVCVSSEV 130          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PORG3 (Ribosomal RNA large subunit methyltransferase N OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rlmN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 1
Query:  142 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            VLLGMS +EL  +A+ +G   + GKQL   IY R+  +      + Q+ R  L E  + +GR P      + DGT K L  + + R +E+V IP  D     R T C+SSQV
Sbjct:   12 VLLGMSLEELTTVALRMGMPRFAGKQLAEWIYVRRATDFAEMTNISQANRQKLAEI-YDLGRYPWSDVQCSVDGTKKYLFPVGEGRFVESVLIPEGD-----RATLCISSQV 117          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PARD8 (Ribosomal RNA large subunit methyltransferase N OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=rlmN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  130 VDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            VD   LLGM+ +EL+ +A ++G  +Y  KQ+   IYK+K+  I     +  + +  L E  + +G  P      + DGT+K L      R +E+V IP +D     R T CVSSQV
Sbjct:    2 VDKRQLLGMTLEELKGVASEVGLPAYAAKQMADWIYKKKITRISEMTNIAVA-KRALLEDSFEIGAYPPSEYQKSKDGTIKYLYAAGPGRFVESVYIPTDD-----RATLCVSSQV 111          
The following BLAST results are available for this feature:
BLAST of CX287101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RLMN_BACFN6.400e-1137.84Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SALRD8.359e-1139.83Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PORG38.359e-1137.50Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PARD88.359e-1135.34Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC01004F12SK Veg1 Citrus clementina cDNA clone C01004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287101 ID=CX287101; Name=CX287101; organism=Citrus clementina; type=EST; length=477bp
ATGACTCTGCTTCGGCAAGTGATCTCTGCTCCCGTAGCACATGCGGTGGT
GCTTTCTCGCTCCTGCCTTGCAGTTTCTGTGACCCCGCGGCGCAAGTTAT
CTGTTTCTTCTTCTTCACGTGCCCCTCGCGTGGACGCCAACGTGCTCCTT
GGCATGTCCGAGCAGGAGCTTCAAAAACTCGCCGTCGACCTCGGCCAGCA
AAGTTACAGAGGGAAGCAGCTTCATCATCTAATTTACAAAAGAAAGGTCA
AAGAAATTGAAAATTTTATTCAACTGCCTCAGTCCTTCAGAAATGATCTC
CAAGAAGCTGGATGGACGGTTGGTCGCTTGCCGATTTTTCGCACGGTCAC
TGCAGCTGATGGAACTGTTAAATTGCTAATAAAGCTGGAAGACAACAGAT
TGATTGAAACTGTTGGCATACCAGTTGAAGACGAGAAAGGTCCCATGCGT
CTTACCGCTTGTGTGTCATCGCAGGTA
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