CX287104

Overview
NameCX287104
Unique NameCX287104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TIM17_NEUCR (Mitochondrial import inner membrane translocase subunit tim-17 OS=Neurospora crassa GN=tim-17 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.537e-27
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  153 SREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLR-QKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLS 548
            +R+PCP  IL+D               H +KG  NSP G R  G   A++M AP +GG+F VWGGLFSTFDC +  LR  KEDPWNSI+AG  TGG L++R G  +A   A+   VLLA+IEG GI   K+L+
Sbjct:    4 TRDPCPWVILNDFGGAFAMGAIGGTIWHGIKGFRNSPYGERRIGAITAIKMRAPALGGNFGVWGGLFSTFDCAIKGLRNHKEDPWNSILAGFFTGGALAVRGGYKAARNGAIGCAVLLAVIEGVGIGFQKMLA 136          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TIM17_YEAST (Mitochondrial import inner membrane translocase subunit TIM17 OS=Saccharomyces cerevisiae GN=TIM17 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.644e-26
Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  153 SREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPM 569
            SR+PCP  IL+D               H +KG  NSP G R SG   A++  AP +GG+F VWGGLFSTFDC +  +R++EDPWN+IIAG  TGG L++R G      S++    LL +IEG G+M  +  +A Q  PM
Sbjct:    6 SRDPCPIVILNDFGGAFAMGAIGGVVWHGIKGFRNSPLGERGSGAMSAIKARAPVLGGNFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALAVRGGWRHTRNSSITCACLLGVIEGVGLMFQR-YAAWQAKPM 143          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TIM17_SCHPO (Mitochondrial import inner membrane translocase subunit tim17 OS=Schizosaccharomyces pombe GN=tim17 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.375e-25
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  135 MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPM 569
            M + + +R+PCP  IL+D               H +KG  NSP G +      A +  AP +GG+F VWGGLFSTFDC +  +R+KEDPWN+IIAG  TGG L++R G  +    A+    +LA+ EG GI L + ++A  N P+
Sbjct:    1 MASADHTRDPCPYVILNDFGAAFSMGTIGGAIWHSIKGWRNSPPGEKRISAIAAAKTRAPVLGGNFGVWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCACILAVFEGLGIALGR-MNAEYNRPV 144          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TIM17_CAEEL (Probable mitochondrial import inner membrane translocase subunit Tim17 OS=Caenorhabditis elegans GN=tim-17 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 55/135 (40.74%), Postives = 76/135 (56.30%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA 551
            E +REPCP RI DD                   G  N+  G +L G  + VRM +   G  FA WGG+FST DC +V +R+KEDP NSI++G  TG  L++R G    + SA+ G V+LA+IEG G++  + + A
Sbjct:    3 EYTREPCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKGKKLVGMMREVRMRSTLTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSVILAMIEGVGLVTTRWMGA 137          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TIM17_DICDI (Mitochondrial import inner membrane translocase subunit tim17 OS=Dictyostelium discoideum GN=timm17 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 3
Query:  162 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQ 557
            PCPD+I  D               +   G   SP   R+      +R  +P+ GG+FA+WG LFS FDCT+ Y+R+ ED  N I AGA TGG L+ R G   + ++A FGG+ + +IE    M+ K + A Q
Sbjct:    4 PCPDKIWQDAGGAFAIGYVLMGVVNIGLGFKRSPPNKRVLYTFALLRKKSPKFGGNFAIWGSLFSGFDCTLSYIRKTEDTVNPIAAGALTGGILAARSGWKHSVQAAAFGGIFIGIIEAFQHMMQKRMQAQQ 135          
The following BLAST results are available for this feature:
BLAST of CX287104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM17_NEUCR2.537e-2748.87Mitochondrial import inner membrane translocase su... [more]
TIM17_YEAST1.644e-2645.32Mitochondrial import inner membrane translocase su... [more]
TIM17_SCHPO2.375e-2541.38Mitochondrial import inner membrane translocase su... [more]
TIM17_CAEEL1.103e-2240.74Probable mitochondrial import inner membrane trans... [more]
TIM17_DICDI8.740e-2037.88Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionC01004G04SK Veg1 Citrus clementina cDNA clone C01004G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287104 ID=CX287104; Name=CX287104; organism=Citrus clementina; type=EST; length=576bp
CGAGGCTCCAGCACTGTTTCCACGCTGCATTCACTTTGTCCGATCAGGCT
GTGATTTTCTTACGGGCTTTGGGTATTGCTTGCGGGGAGATAGGTGCGTT
GGAGTGCTAGATTTATCTCCTTTTTACGACATCTATGGGAACCCCTGAAA
CTTCTCGAGAGCCTTGCCCTGACCGTATTCTTGATGATGTTGGTGGTGCA
TTCGGAATGGGTGCGGTTGGAGGTGCCGCATTCCACTTCTTGAAAGGCAC
ATATAATTCCCCGTCAGGTGCACGTTTAAGTGGAGGAACTCAAGCAGTAC
GTATGAATGCCCCTCGAGTTGGCGGCAGTTTTGCTGTGTGGGGCGGCCTC
TTCTCTACTTTTGATTGCACAATGGTGTATCTCCGACAAAAGGAAGACCC
ATGGAACTCAATTATAGCTGGTGCTGCCACTGGGGGGTTTCTTTCAATGC
GGCAAGGGTTGGGTTCTGCTTCCAGGTCGGCTTTGTTTGGTGGGGTCTTG
CTTGCTTTGATTGAAGGAGCTGGGATCATGTTAAATAAGGTTCTCAGTGC
ACCGCAGAATATGCCTATGATGGAAG
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