CX287112

Overview
NameCX287112
Unique NameCX287112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig29 contig Ccv1_Contig29:1..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: EA87_VICFA (Embryonic abundant protein USP87 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.135e-18
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  189 QTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 485
            Q   +   VK++  D +V+CH+ N+   VF CH  + T AY+V L   DGTK KA  VCH DT   NP+ L ++ L+V  GTVP+CHF+      WVPN
Sbjct:  163 QDQYVVEDVKKVG-DNAVMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKALTVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWVPN 259          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.112e-18
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = -1
Query:  189 TKMQTYTI-AAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 494
            T  Q Y + A     ++    V CH   Y YAVF CH T T  AY V L G DGTKA+A A CHTD +    +  A++ L V PG+VP+CHFLP+D ++WV N
Sbjct:  140 TPRQAYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCHTT-TAAAYTVTLAGADGTKAEALAACHTDAAPRVAE--AYKRLGVAPGSVPVCHFLPQDDMLWVRN 239          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURPB_ORYSJ (BURP domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=BURP11 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.807e-17
Identity = 45/98 (45.92%), Postives = 52/98 (53.06%), Query Frame = -1
Query:  177 VVCHKQNYPYAVFYCHATQTTRAYIVPL------------EGVDGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPNKKTG 434
            V CH   YPYAVFYCH+T+ T AY V L            E     K +A AVCH DTS W   +  F    VKPG V +CHFL +  IVWVP  + G
Sbjct:  225 VACHDLTYPYAVFYCHSTKPTAAYAVTLVAATTGDGDGEGEAASPAKMEALAVCHLDTSRWRADNPFFVAHGVKPGEVSVCHFLTKLSIVWVPRHEQG 322          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.917e-16
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  192 SVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVD-------GT--KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 437
            +V CH   +P+AVFYCHA   TR Y V LE  +       GT  K +A AVCH DTS ++PK   F    ++PG   +CHF+  D ++W P
Sbjct:  244 TVTCHTMRFPFAVFYCHAINPTRVYAVVLESEEDGSGSGSGTPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIWAP 334          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.870e-14
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = -1
Query:  189 TKMQTYTIAA--GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 494
            T  Q YT+ A   V  ++    V CH   Y YAVF CH T  T AY V L G DGT+A+A A CH D  A+     A++ + V  G+VP+CH +P   ++WV N
Sbjct:  214 TPRQEYTVEAVKPVVSVSGGNMVTCHGMPYAYAVFGCHTTTAT-AYAVTLAGADGTRAEALATCHGD--AFPGVAEAYERVGVAAGSVPVCHIMPLGDMLWVRN 314          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.166e-14
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = -1
Query:  198 GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 464
            G+      K+V CH+  YPY ++YCH+    R Y   L  ++  K      A+CH DTS+W P H AF  L  KPG + +CH++ E+ + W
Sbjct:  532 GINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNW 622          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURP9_ORYSJ (BURP domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=BURP9 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.166e-14
Identity = 39/108 (36.11%), Postives = 51/108 (47.22%), Query Frame = -1
Query:  192 KGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAKAA-----AVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 500
            +G     Y +A+      +   + CH   YPY VF+CH  + TR Y V L  V G   +       AVCH +TS W+  H  F  + VKPG    CHF     I+WVP
Sbjct:  401 EGVPSLRYIVASATPVPNSQSMLACHDMLYPYKVFFCHTPKQTRLYQVSL--VSGESGRPLIDGLLAVCHQNTSDWDTGHPFFHFMDVKPGETTACHFFGRGSIIWVP 506          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.442e-14
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = -1
Query:  198 GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 464
            GV      +SV CH+  +PY V+YCH+    R Y   +   D  +      A+CH DTS W+P H AF  L  KPG V +CH++ E  + W
Sbjct:  533 GVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTW 623          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.701e-13
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = -1
Query:  198 GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 464
            G+      KSV CH+  YPY ++YCH+    R Y   L     +KAK     A+CH DTSAW   H AF +L  +PG + +CH++ E+ + W
Sbjct:  528 GINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPK-SKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNW 618          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.701e-13
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = -1
Query:  198 GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 464
            G+      KSV CH+  YPY ++YCH+    R Y   +   + +K K     A+CH DTS+W P H AF  L   PG + +CH++ E+ + W
Sbjct:  536 GINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPN-SKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTW 626          
The following BLAST results are available for this feature:
BLAST of CX287112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
EA87_VICFA2.135e-1844.44Embryonic abundant protein USP87 OS=Vicia faba PE=... [more]
BURP6_ORYSJ8.112e-1846.60BURP domain-containing protein 6 OS=Oryza sativa s... [more]
BURPB_ORYSJ1.807e-1745.92BURP domain-containing protein 11 OS=Oryza sativa ... [more]
BURPA_ORYSJ9.917e-1642.86BURP domain-containing protein 10 OS=Oryza sativa ... [more]
BURP8_ORYSJ1.870e-1442.31BURP domain-containing protein 8 OS=Oryza sativa s... [more]
JP650_ARATH4.166e-1437.36Probable polygalacturonase non-catalytic subunit J... [more]
BURP9_ORYSJ4.166e-1436.11BURP domain-containing protein 9 OS=Oryza sativa s... [more]
BURPC_ORYSJ5.442e-1438.46BURP domain-containing protein 12 OS=Oryza sativa ... [more]
JP630_ARATH2.701e-1339.13Probable polygalacturonase non-catalytic subunit J... [more]
GP1_SOLLC2.701e-1336.96Polygalacturonase-1 non-catalytic subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC01004G12SK Veg1 Citrus clementina cDNA clone C01004G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287112 ID=CX287112; Name=CX287112; organism=Citrus clementina; type=EST; length=506bp
AGGAAGATAACTACTAGGCACACAAGTTTTGAAGTACAGCAAGCTTAATG
TATGCATAACAAATTGAACTGGGTATTCAAAGTAAATTATTGTACAACTA
AATGGATAACTGCTTGAACTGACTGATTCGAACTCTGCTGATTAAGTAGA
TGGGATAAGAGGATCAAATTCTATTCTCCAGTCTTCTTATTGGGAACCCA
GACAATGTGATCCTCAGGAAGGAAGTGACATATAGGAACAGTTCCTGGCT
TAACTTTGAGCACTTGAAAAGCTAAATGCTTGGGGTTCCATGCTGATGTA
TCTGTGTGGCAGACTGCTGCTGCTTTGGCTTTTGTCCCATCAACACCTTC
CAAGGGAACTATGTAAGCCCTTGTGGTTTGTGTTGCATGGCAGTAGAATA
CAGCATATGGATAGTTCTGCTTATGGCACACTACTGATTTGTCGGCTGCC
ATCTGCTTCACTCCAGCTGCGATTGTATATGTCTGCATCTTGGTTCCTTT
TTTTAC
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