CX287112

Overview
NameCX287112
Unique NameCX287112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig29 contig Ccv1_Contig29:1..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = -1
Query:  198 GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 464
            G+      ++V CH+  YPY ++YCH+    R Y   L      +      A+CH DTSAW+P H AF  L   PG + +CH++ E+ + W
Sbjct:  530 GINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = -1
Query:  198 GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 464
            G+      KSV CH+  YP  ++YCH+    R Y   +   + +KAK     A+CH DTS+W P+H AF  L   PG + +CH++ E+ + W
Sbjct:  538 GINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTW 628          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = -1
Query:  195 GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWV 464
            G+       SV CH+  +PY V+YCH+    R Y   +  V  TK K     A+CH DTSAWN  H AF  L  KPG   +CH++    + WV
Sbjct:  248 GINGGKITSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQ-TKEKINSGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWV 339          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURP2_ORYSJ (BURP domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=BURP2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = -1
Query:  189 VVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAKAAAVCHTDTSAWNPKHL-AFQVLKVKPGTVPICHFLPEDHIVWVPN 434
            V CH+  Y YAVF  H  +   AY V L G DGT A+A A CH D          A++ L V PG V +CHFLP+D ++WV N
Sbjct:  206 VACHRMPYAYAVFGVHGIKGA-AYTVTLAGADGTMAEAVAACHGDVDGHGVAVAEAYKRLGVAPGKVAVCHFLPQDDMLWVRN 287          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.858e-13
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = -1
Query:  198 GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 464
            G+      KSV CH+  YP  ++YCH+    R Y   +   + +KAK     A+CH DTS+W P+H AF  L   PG + +CH++ E+ + W
Sbjct:  535 GINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTW 625          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURP4_ORYSJ (BURP domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=BURP4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.900e-12
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = -1
Query:  189 GTKMQTYTIAA-GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGT---KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 497
            G + + Y +AA GV ++  D  V CH   Y Y V+YCH      A  V L  V       A A AVCH +T+ W+  +  F++LK   G   ICH++P+ +++W+ N
Sbjct:  376 GREPRRYVVAADGVARIGGDAVVACHPMPYLYEVYYCHRPADAVALRVDLHAVADVGLGGATAVAVCHVNTTTWDSAY--FELLKASRGDA-ICHYMPQGYVLWLAN 479          
BLAST of CX287112 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = -1
Query:  201 KSVVCHKQNYPYAVFYCHATQTTRAYIVPLEGVDGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPG-----TVPICHFLPEDHIV 440
            +SV CH+  +PY V+YCH+  T R Y   +  VD  +      A+CH DTS W+P H AF  L  KPG     T  IC  + +   V
Sbjct:  604 RSVSCHQSLFPYLVYYCHSVPTVRVYEADILAVDSNQKINHGVAICHLDTSDWSPNHGAFIALGGKPGKKVDPTKFICFIMQDGEFV 690          
The following BLAST results are available for this feature:
BLAST of CX287112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
Y639_ARATH6.016e-1335.16Probable polygalacturonase non-catalytic subunit A... [more]
GP3_SOLLC6.016e-1336.96Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
BURPG_ORYSJ6.016e-1339.78BURP domain-containing protein 16 OS=Oryza sativa ... [more]
BURP2_ORYSJ6.016e-1345.78BURP domain-containing protein 2 OS=Oryza sativa s... [more]
GP2_SOLLC7.858e-1336.96Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
BURP4_ORYSJ3.900e-1235.51BURP domain-containing protein 4 OS=Oryza sativa s... [more]
BURPE_ORYSJ5.631e-1139.08BURP domain-containing protein 14 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC01004G12SK Veg1 Citrus clementina cDNA clone C01004G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287112 ID=CX287112; Name=CX287112; organism=Citrus clementina; type=EST; length=506bp
AGGAAGATAACTACTAGGCACACAAGTTTTGAAGTACAGCAAGCTTAATG
TATGCATAACAAATTGAACTGGGTATTCAAAGTAAATTATTGTACAACTA
AATGGATAACTGCTTGAACTGACTGATTCGAACTCTGCTGATTAAGTAGA
TGGGATAAGAGGATCAAATTCTATTCTCCAGTCTTCTTATTGGGAACCCA
GACAATGTGATCCTCAGGAAGGAAGTGACATATAGGAACAGTTCCTGGCT
TAACTTTGAGCACTTGAAAAGCTAAATGCTTGGGGTTCCATGCTGATGTA
TCTGTGTGGCAGACTGCTGCTGCTTTGGCTTTTGTCCCATCAACACCTTC
CAAGGGAACTATGTAAGCCCTTGTGGTTTGTGTTGCATGGCAGTAGAATA
CAGCATATGGATAGTTCTGCTTATGGCACACTACTGATTTGTCGGCTGCC
ATCTGCTTCACTCCAGCTGCGATTGTATATGTCTGCATCTTGGTTCCTTT
TTTTAC
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