CX287113

Overview
NameCX287113
Unique NameCX287113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13848 contig Ccv1_Contig13848:544..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.010e-38
Identity = 89/187 (47.59%), Postives = 111/187 (59.36%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNHDTQSCMDPNVMEAK---------------IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREI--VPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FL EL + Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H TQ CMDPNV+E                 +++S+ GHDGPFGA   KR+  I     + GMK LDMN AE  +V  +     V  M   GMEVA +DG  RMGPT
Sbjct:  119 RKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPT 305          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.094e-23
Identity = 65/163 (39.88%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            ++ A+  LDE GV+Y +  N + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M   T   +DP  +EAK VV S GH    GA   + L   G+I ++PG   +     E+  V  TRE+ PG+  TGM    + GAPRMGP
Sbjct:   75 QESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGP 229          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.665e-23
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:   13 AQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            A+  LDE G+ Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M       +DP  +EAK V+ S GH        VKR    G++  +PG  A+     E   V+ TRE+ PG+ VTGM    I GAPRMGP
Sbjct:   79 AREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGP 230          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.665e-23
Identity = 64/163 (39.26%), Postives = 89/163 (54.60%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            ++ A+  LDE  + Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+I+ +PG  A+     E   V  T+E+ PG+ VTGM    + GAPRMGP
Sbjct:   76 QEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGP 230          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.957e-23
Identity = 65/163 (39.88%), Postives = 89/163 (54.60%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            ++ A+  LDE  + Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+I+ +PG  A+     E   V  TRE+ PG+ VTGM    I GAPRMGP
Sbjct:   76 QEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGP 230          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.553e-18
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            R PAQR LDEL V Y+     +      L  + + ++ L     ++ N    +D+IV+  RV GVV NW+ V       +C+DP  + A+ VV + GHD    A   ++L   GM+++   +  + +  +ED +V  T E+ PG++V G+ VA + G PRMGPT
Sbjct:   80 RAPAQRILDELEVPYEAVKPGLYRTKGPLLAAKLAARAL-EAGAEVLNLTMLDDVIVENSRVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVEA-SKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPT 237          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.229e-16
Identity = 65/192 (33.85%), Postives = 94/192 (48.96%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDN----YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD----------GPFGATGVKRLK--SIGMIDSV-----------PGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            R PAQ  LDEL V Y+E D     YV     A+ +S I S   A   V+  N     D++ +   RVGG+V NW  V       +C+DP  +E+ +VV S GHD          G   A G++     + GM ++            PG  ++ ++ +ED +V  T  + PG++ TGM VA ++G PRMGPT
Sbjct:   83 RDPAQSVLDELDVPYEESDEASGLYVADGPHAV-SSLIKSACDAGAEVQ--NMTEFTDVVTRENHRVGGIVLNWTPVHALPRELTCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPT 271          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA-LVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            K  + FL E+ +EY+ +++++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW   V +       +DP  ++A  VV   GH     A  V  L   G+++       +D + AE  +V  T EI PG++V+GM V  + G PRMGP
Sbjct:   78 KELENFLKEVEIEYEVKEDHIVVD-SVHFASGLLYRA-TKAGAIVFNNVSVEDVAVQNGRVCGVVVNWGPTVRLGLH----VDPITVKASFVVDGTGHP----ANVVSLLAKRGLVEMKTEFP-MDADEAEKFVVDNTGEIFPGLLVSGMAVCAVHGGPRMGP 229          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.152e-13
Identity = 62/193 (32.12%), Postives = 88/193 (45.60%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEY----DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMI------DSVPGMKALDMNT------------------AEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            R PAQ+ LDEL V++    D +  YV     A    + + K       K+ N     D++++   RVGG+V NW  V       +C+DP  +EA +V+ + GHD    A  VK+L   G++      D   GM   D +T                  +EDA+V  T     G++VTGM  A   G PRMGPT
Sbjct:   87 RDPAQQVLDELEVDHKRSKDSEGLYVANGPEAC---SGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPT 272          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULSO (Putative thiazole biosynthetic enzyme OS=Sulfolobus solfataricus GN=SSO0436 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 47/164 (28.66%), Postives = 78/164 (47.56%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+  TGM V  + G PRMGP
Sbjct:   83 KPADEILREVNIRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYATGMAVTEVKGLPRMGP 240          
The following BLAST results are available for this feature:
BLAST of CX287113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
THI4_YEAST3.010e-3847.59Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRKO2.094e-2339.88Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO4.665e-2339.38Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU4.665e-2339.26Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB7.957e-2339.88Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE1.553e-1834.15Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_HALWD4.229e-1633.85Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_THEMA1.042e-1433.13Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_HALMA1.152e-1332.12Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_SULSO2.566e-1328.66Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionC01004H01SK Veg1 Citrus clementina cDNA clone C01004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287113 ID=CX287113; Name=CX287113; organism=Citrus clementina; type=EST; length=496bp
AGGCGCAAGCCAGCTCAGAGATTCCTAGACGAGCTCGGCGTCGAGTACGA
CGAGCAAGACAACTACGTCGTGATCAAGCATGCCGCGTTGTTCACTTCAA
CAATCATGAGCAAGCTGTTGGCGAGGCCAAACGTGAAGTTGTTCAACGCT
GTTGCAGCTGAGGATTTGATCGTCAAGGGAGGGAGAGTAGGTGGCGTCGT
CACAAACTGGGCCTTGGTGTCTATGAATCACGACACACAGTCTTGCATGG
ACCCCAATGTGATGGAGGCCAAGATTGTGGTCAGCTCGTGTGGCCATGAC
GGCCCTTTTGGGGCTACCGGTGTTAAGAGGCTTAAGAGTATTGGCATGAT
TGACTCCGTCCCCGGAATGAAAGCTCTCGATATGAACACTGCAGAGGATG
CTATCGTTAGGCTTACCAGGGAGATCGTGCCTGGCATGATTGTCACGGGC
ATGGAAGTCGCATAGATCGACGGTGCCCCTAGAATGGGACCTACAT
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