CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.010e-24
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            +RSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.010e-24
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGR+HR+L++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.010e-24
Identity = 62/106 (58.49%), Postives = 75/106 (70.75%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHR L++              Y AA++EYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPV-YLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PHANO (Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 63/106 (59.43%), Postives = 75/106 (70.75%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_GIBZE (Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_PLADU2.010e-2458.49Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_CAEEL2.010e-2458.49Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2A_ASTRU2.010e-2458.49Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2A_PODAN2.625e-2458.49Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=... [more]
H2A_PHANO2.625e-2458.49Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 ... [more]
H2A_PARAN2.625e-2459.43Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_NEUCR2.625e-2458.49Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3[more]
H2A_NEOFI2.625e-2458.49Histone H2A OS=Neosartorya fischeri (strain ATCC 1... [more]
H2A_MAGGR2.625e-2458.49Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]
H2A_GIBZE2.625e-2458.49Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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