CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_EMENI (Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_BOTFB (Histone H2A OS=Botryotinia fuckeliana (strain B05.10) GN=hta1 PE=3 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ASPTN (Histone H2A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hta1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ASPOR (Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ASPCL (Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_RAT (Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRS RAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSFRAGLQFPVGRVHRLLRQGNYAERIGAGTPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 63/106 (59.43%), Postives = 75/106 (70.75%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.429e-24
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            SRS+RAGLQFPVGRVHR L++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K + +
Sbjct:   17 SRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSK 123
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_EMENI2.625e-2458.49Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV... [more]
H2A_CHAGB2.625e-2458.49Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV... [more]
H2A_BOTFB2.625e-2458.49Histone H2A OS=Botryotinia fuckeliana (strain B05.... [more]
H2A_ASPTN2.625e-2458.49Histone H2A OS=Aspergillus terreus (strain NIH 262... [more]
H2A_ASPOR2.625e-2458.49Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=... [more]
H2A_ASPFU2.625e-2458.49Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ... [more]
H2A_ASPCL2.625e-2458.49Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 S... [more]
H2A4_RAT2.625e-2458.88Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2[more]
H2A3_PSAMI2.625e-2459.43Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]
H2AL_STRPU3.429e-2456.48Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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