CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.429e-24
Identity = 60/106 (56.60%), Postives = 77/106 (72.64%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGR+HRLL++              Y  ++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K S
Sbjct:   16 SRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPV-YLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKS 120
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.478e-24
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 3 
Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            PVSRS ++GLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LA+R DEEL TL+KG TIA GGV+P+I+  L+ K S++
Sbjct:   24 PVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEK 132
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_KLULA (Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            SRS++AGL FPVGRVHRLL++              Y  A+LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K S +
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSSK 123
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1F_RAT (Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELA NA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAANAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            SRSS+AGLQFPVGR+HRLLK+              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+    I+ GGV+PHI   L+   +K
Sbjct:   17 SRSSKAGLQFPVGRIHRLLKKGNYAQRIGSGAPV-YLAAVLEYLAAEILELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGSVVISQGGVLPHIMAELLPVKTK 122
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A2_PICGU3.429e-2456.60Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A4_ARATH4.478e-2456.36Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_KLULA7.639e-2455.56Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 S... [more]
H2A7_ORYSJ7.639e-2457.55Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI7.639e-2457.55Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A4_WHEAT7.639e-2457.55Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]
H2A1_ORYSJ7.639e-2457.55Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]
H2A1_ORYSI7.639e-2457.55Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A1F_RAT7.639e-2457.94Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=... [more]
H2A_CRYNE9.976e-2456.07Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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