CX287116 | Citrus Genome Database

Overview


Name	CX287116
Unique Name	CX287116
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX287116_ssr6	microsatellite	CX287116_ssr6:6..17.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574	contig	Ccv1_Contig574:107..682.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 3

Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            VSRS +AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH+ L+ K S
Sbjct:   19 VSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKS 124

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K S
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKS 121

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 3

Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 440
            VSRSS+AGLQFPVGR+ R LK               Y +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   20 VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 123

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 3

Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 440
            VSRSS+AGLQFPVGR+ R LK               Y +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 3

Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 440
            VSRSS+AGLQFPVGR+ R LK               Y +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL+               Y  A+LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K S
Sbjct:   18 SRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPV-YLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE*FVTPSSSR 479
            +RS++AGL FPVGRVHRLL+               Y  A+LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K S +    PS+S+
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPV-YLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK----PSASQ 129

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL+               Y  A+LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K S
Sbjct:   18 SRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPV-YLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K S
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 59/102 (57.84%), Postives = 75/102 (73.53%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLI 434
            SRS++AGL FPVGR+HRLL++              Y  ++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPV-YLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLL 117

The following BLAST results are available for this feature:

BLAST of CX287116 vs. ExPASy Swiss-Prot

BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241


Match Name	E-value	Identity	Description
H2AX_PICAB	9.976e-24	57.01	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2A1_CANAL	9.976e-24	56.60	Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=...	[more]
H2AX_CICAR	1.303e-23	57.14	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AXB_ORYSJ	1.303e-23	57.14	Probable histone H2AXb OS=Oryza sativa subsp. japo...	[more]
H2AXB_ORYSI	1.303e-23	57.14	Probable histone H2AXb OS=Oryza sativa subsp. indi...	[more]
H2A2_YEAST	1.303e-23	56.60	Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 ...	[more]
H2A2_CANGA	1.303e-23	52.99	Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=...	[more]
H2A1_YEAST	1.303e-23	56.60	Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 ...	[more]
H2A1_PICST	1.303e-23	56.60	Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1	[more]
H2A1_PICGU	1.303e-23	57.84	Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA