CX287116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23 Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446 SRS++AGL FPVGRVHRLL++ Y ++LEYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+IH++L+ K S Sbjct: 17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23 Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE*FVTPSSSR 479 +RS++AGL FPVGRVHRLL+ Y A+LEYL AE+LELAGNA++D K RI PRHLQLAIR D+EL+ L+ TIA GGV+P+IH++L+ K S + PS+S+ Sbjct: 18 TRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPV-YLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK----PSASQ 129
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_USTMA (Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23 Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 SRS++AGLQFPVGR+HRLL++ Y AA+LEYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TI+ GGV+P I L+ S Sbjct: 20 SRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPFIQSELLPAKS 124
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23 Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 SRSSRAGLQFPVGRVHR L++ Y AA+ EYL AE+LELAGNA+ D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K + Sbjct: 3 SRSSRAGLQFPVGRVHRFLRKGNYAQRVGAGAPV-YLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23 Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 SRS++AGL FPVGRVHRLL++ Y A+LEYL AE+LELAGNA++D K RI PRHLQLAIR D+EL+ L+ TIA GGV+P+IH +L+ K S Sbjct: 17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKS 121
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_ASHGO (Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23 Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 SRS++AGL FPVGRVHRLL++ Y A+LEYL AE+LELAGNA++D K RI PRHLQLAIR D+EL+ L+ TIA GGV+P+IH +L+ K S Sbjct: 17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YMTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKS 121
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.222e-23 Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 434 VSRSS+AGLQFPVGR+ R LK Y +A+LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ Sbjct: 23 VSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.222e-23 Identity = 60/106 (56.60%), Postives = 73/106 (68.87%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 SRSS+ GLQFPVGR+ R LK Y AA+LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH+ L+ K + Sbjct: 18 SRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.903e-23 Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449 S S++AGLQFPVGR+ R LK+ Y AA+LEYL AE+LELAGNA++D K RITPRH+QLA+R DEEL+ + G T A GGV+P+IH L+ K S+ Sbjct: 17 SNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPV-YLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKSQ 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.903e-23 Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 434 VSRSS+AGLQFPVGR+ R LK Y +A+LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ Sbjct: 23 VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124 The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bpback to top |