CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K S
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE*FVTPSSSR 479
            +RS++AGL FPVGRVHRLL+               Y  A+LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K S +    PS+S+
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPV-YLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK----PSASQ 129          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_USTMA (Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23
Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRS++AGLQFPVGR+HRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TI+ GGV+P I   L+   S
Sbjct:   20 SRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPFIQSELLPAKS 124          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23
Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHR L++              Y AA+ EYL AE+LELAGNA+ D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:    3 SRSSRAGLQFPVGRVHRFLRKGNYAQRVGAGAPV-YLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL++              Y  A+LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH +L+ K S
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKS 121          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_ASHGO (Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL++              Y  A+LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH +L+ K S
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YMTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKS 121          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.222e-23
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 434
            VSRSS+AGLQFPVGR+ R LK               Y +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+
Sbjct:   23 VSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.222e-23
Identity = 60/106 (56.60%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+ GLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K +
Sbjct:   18 SRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.903e-23
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            S S++AGLQFPVGR+ R LK+              Y AA+LEYL AE+LELAGNA++D K  RITPRH+QLA+R DEEL+  + G T A GGV+P+IH  L+ K S+
Sbjct:   17 SNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPV-YLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKSQ 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.903e-23
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 434
            VSRSS+AGLQFPVGR+ R LK               Y +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+
Sbjct:   23 VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124          
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A1_DEBHA1.303e-2356.60Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=... [more]
H2A1_CANGA1.303e-2352.99Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=... [more]
H2A_USTMA1.702e-2356.60Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3[more]
H2A3_LYTPI1.702e-2358.49Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A2_ASHGO1.702e-2356.60Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3[more]
H2A1_ASHGO1.702e-2356.60Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3[more]
H2AXA_ARATH2.222e-2357.28Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2A8_ORYSI2.222e-2356.60Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]
H2A_PLAFA2.903e-2354.21Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2AXB_ARATH2.903e-2357.28Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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