CX287116 | Citrus Genome Database

Overview


Name	CX287116
Unique Name	CX287116
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX287116_ssr6	microsatellite	CX287116_ssr6:6..17.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574	contig	Ccv1_Contig574:107..682.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_CANAL (Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 2.903e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 434
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQSLL 117

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_SCHPO (Histone H2A-alpha OS=Schizosaccharomyces pombe GN=hta1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 2.903e-23
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+S
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTS 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 3

Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            VSRS+RAGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   SK+
Sbjct:   20 VSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKK 127

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 3

Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            VSRS+RAGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   SK+
Sbjct:   20 VSRSARAGLQFPVGRISRFLKHGRYSERIGTGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKK 127

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = 3

Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            +SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   17 ISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKA 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRS++AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K S
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQS 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLI 434
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLL 117

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_DEBHA (Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLI 434
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLL 117

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_LODEL (Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLI 434
            SRS++AGL FPVGRVHRLL++              Y  ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH+SL+
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPV-YLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLL 117

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 62/110 (56.36%), Postives = 75/110 (68.18%), Query Frame = 3

Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            PVSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K + E
Sbjct:   25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133

The following BLAST results are available for this feature:

BLAST of CX287116 vs. ExPASy Swiss-Prot

BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241


Match Name	E-value	Identity	Description
H2A2_CANAL	2.903e-23	57.84	Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=...	[more]
H2A1_SCHPO	2.903e-23	57.55	Histone H2A-alpha OS=Schizosaccharomyces pombe GN=...	[more]
H2AX_TETTH	3.791e-23	56.88	Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P...	[more]
H2AX_TETPY	3.791e-23	56.88	Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE...	[more]
H2A7_WHEAT	3.791e-23	56.07	Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S...	[more]
H2A2_SCHPO	3.791e-23	57.55	Histone H2A-beta OS=Schizosaccharomyces pombe GN=h...	[more]
H2A2_PICST	3.791e-23	57.84	Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1	[more]
H2A2_DEBHA	3.791e-23	57.84	Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=...	[more]
H2A1_LODEL	3.791e-23	57.84	Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1...	[more]
H2A6_ORYSJ	4.951e-23	56.36	Probable histone H2A.6 OS=Oryza sativa subsp. japo...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA