CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 62/110 (56.36%), Postives = 75/110 (68.18%), Query Frame = 3 
Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            PVSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K + E
Sbjct:   25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            +SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   17 MSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            +SRSS+AGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   17 MSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 3 
Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            PVSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K +++
Sbjct:   23 PVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKAEK 131
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            VSRS+RAGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   +K+
Sbjct:   20 VSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A6_ORYSI4.951e-2356.36Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A3_ORYSJ4.951e-2356.60Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI4.951e-2356.60Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A2_ARATH4.951e-2356.60Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A6_ARATH6.466e-2356.60Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A3_ARATH6.466e-2356.60Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A2_ORYSJ6.466e-2356.07Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI6.466e-2356.07Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A_EUPES8.445e-2354.55Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A1_TETTH8.445e-2355.96Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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