CX287116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38 Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452 VSRS RAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K ++ Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38 Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452 VSRS RAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K ++ Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38 Identity = 82/107 (76.64%), Postives = 87/107 (81.31%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK 449 VSRS+RAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K + Sbjct: 18 VSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKEE 124
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38 Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452 VSRS RAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K ++ Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38 Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452 VSRS RAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K ++ Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38 Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452 VSRS RAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K ++ Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 9.294e-38 Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 440 VSRS+RAGLQFPVGR+HR LK+ Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAGGGVIPHIH+ L+NK Sbjct: 20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMNK 123
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3) HSP 1 Score: 155.992 bits (393), Expect = 1.214e-37 Identity = 81/108 (75.00%), Postives = 86/108 (79.63%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452 VSRS RAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGG IPHIHKSLI K ++ Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGAIPHIHKSLIGKKGQQ 125
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 2.531e-35 Identity = 77/107 (71.96%), Postives = 82/107 (76.64%), Query Frame = 3 Query: 126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSS 446 P SRS +AGLQFPVGR+HR LK Y AAILEYLTAEVLELAGNASKD KV+RITPRHL LAIRGDEELD LIK TIAGGGVIPHIHK+L+ K S Sbjct: 27 PQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGKHS 133
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 5.639e-35 Identity = 72/107 (67.29%), Postives = 87/107 (81.31%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452 ++S+RAGLQFPVGR+HR LK YT+AILEYLTAEVLELAGNASKD+++KRITPRHLQLAIRGDEELD++++ TIAGGGV+PHIHK+LI SK+ Sbjct: 25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVRATIAGGGVLPHIHKTLIKAPSKK 131 The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bpback to top |