CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38
Identity = 82/107 (76.64%), Postives = 87/107 (81.31%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK 449
            VSRS+RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  +
Sbjct:   18 VSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKEE 124
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 9.294e-38
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 440
            VSRS+RAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAGGGVIPHIH+ L+NK
Sbjct:   20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMNK 123
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.214e-37
Identity = 81/108 (75.00%), Postives = 86/108 (79.63%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGG IPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGAIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.531e-35
Identity = 77/107 (71.96%), Postives = 82/107 (76.64%), Query Frame = 3 
Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSS 446
            P SRS +AGLQFPVGR+HR LK               Y AAILEYLTAEVLELAGNASKD KV+RITPRHL LAIRGDEELD LIK TIAGGGVIPHIHK+L+ K S
Sbjct:   27 PQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGKHS 133
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.639e-35
Identity = 72/107 (67.29%), Postives = 87/107 (81.31%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            ++S+RAGLQFPVGR+HR LK               YT+AILEYLTAEVLELAGNASKD+++KRITPRHLQLAIRGDEELD++++ TIAGGGV+PHIHK+LI   SK+
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVRATIAGGGVLPHIHKTLIKAPSKK 131
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AV_MOUSE4.172e-3875.93Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3[more]
H2AV_HUMAN4.172e-3875.93Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3[more]
H2AV_DROME4.172e-3876.64Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]
H2AV_DANRE4.172e-3875.93Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]
H2AV_CHICK4.172e-3875.93Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]
H2AV_BOVIN4.172e-3875.93Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3[more]
H2AV_CAEEL9.294e-3876.92Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AV_RABIT1.214e-3775.00Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AV_TETTH2.531e-3571.96Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_USTMA5.639e-3567.29Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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