CX287116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23 Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452 VSRS+RAGLQFPVGR+ R LK Y AA+LEYL AEVLELAGNA+KD K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ +K+ Sbjct: 20 VSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23 Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 +RSS+AGLQFPVGR+ R LK+ Y AA+LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ K + Sbjct: 18 TRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22 Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 3 Query: 126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 PVSRS +AGLQFPVGR+ R LK+ Y AA+LEYL AEVLELAGNA++D K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+ K + Sbjct: 26 PVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22 Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 3 Query: 126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 PVSRS +AGLQFPVGR+ R LK+ Y AA+LEYL AEVLELAGNA++D K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+ K + Sbjct: 26 PVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22 Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446 SRS++A L FPVGRVHRLL++ Y AA+LEYL E+LEL+GNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+IH++L+ + S Sbjct: 20 SRSAKADLTFPVGRVHRLLRKGNYAQRIGAGAPI-YLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKS 124
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22 Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 VS+S +AGLQFPVGR+ R LK+ Y AA+LEYL AEVLELAGNA++D K RI PRHL LAIR DEEL L+ G TIA GGV+P+I+ L+ K S Sbjct: 25 VSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPV-YMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKS 130
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22 Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE*FVTPSSSR 479 VS+S +AGLQFPVGR+ R LK+ Y AA+LEYL AEVLELAGNA++D K RI PRHL LAIR DEEL L+ G TIA GGV+P+I+ L+ K S T SSS+ Sbjct: 26 VSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS-----TASSSQ 137
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22 Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452 V+RS +AGLQFPVGR+ R LK+ Y AA+LEYL AEVLELAGNA+KD K RI PRHL LA+R D+EL L+ G TIA GGVIP+I+ L+ K + E Sbjct: 22 VTRSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKAAE 129
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22 Identity = 61/116 (52.59%), Postives = 78/116 (67.24%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE*FVTPSS 473 V+RS+RAGLQFPVGR+ R LK+ Y AA+LEYL AEVLELAGNA++D K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K +++ T S Sbjct: 23 VTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKS 137
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4) HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22 Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-----NKSSKE*FVTPSSSR 479 SRS++AG+ FPVGR+ R +K+ Y AA+LEYLTAE+LELAGNA++D K R+TPRH+ LA+ DEEL+ L+KG TIA GGV+P+IH L+ +K E +TP ++ Sbjct: 14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPV-YMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134 The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bpback to top |