CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            VSRS+RAGLQFPVGR+ R LK               Y AA+LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   +K+
Sbjct:   20 VSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            +RSS+AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   18 TRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            PVSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K +
Sbjct:   26 PVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            PVSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K +
Sbjct:   26 PVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRS++A L FPVGRVHRLL++              Y AA+LEYL  E+LEL+GNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ + S
Sbjct:   20 SRSAKADLTFPVGRVHRLLRKGNYAQRIGAGAPI-YLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKS 124          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            VS+S +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRHL LAIR DEEL  L+ G TIA GGV+P+I+  L+ K S
Sbjct:   25 VSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPV-YMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKS 130          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE*FVTPSSSR 479
            VS+S +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRHL LAIR DEEL  L+ G TIA GGV+P+I+  L+ K S     T SSS+
Sbjct:   26 VSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS-----TASSSQ 137          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            V+RS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA+KD K  RI PRHL LA+R D+EL  L+ G TIA GGVIP+I+  L+ K + E
Sbjct:   22 VTRSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKAAE 129          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 61/116 (52.59%), Postives = 78/116 (67.24%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE*FVTPSS 473
            V+RS+RAGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K +++   T  S
Sbjct:   23 VTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKS 137          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-----NKSSKE*FVTPSSSR 479
            SRS++AG+ FPVGR+ R +K+              Y AA+LEYLTAE+LELAGNA++D K  R+TPRH+ LA+  DEEL+ L+KG TIA GGV+P+IH  L+     +K   E  +TP  ++
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPV-YMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134          
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A1_TETPY8.445e-2355.96Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2A1_ARATH8.445e-2355.66Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A4_ORYSJ1.103e-2256.48Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI1.103e-2256.48Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A_YARLI1.441e-2254.72Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]
H2A7_ARATH1.441e-2257.01Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A5_ARATH1.881e-2255.08Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A3_WHEAT1.881e-2255.96Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]
H2A1_MEDTR1.881e-2252.59Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2AY_RAT3.209e-2248.36Core histone macro-H2A.1 OS=Rattus norvegicus GN=H... [more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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