CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-----NKSSKE*FVTPSSSR 479
            SRS++AG+ FPVGR+ R +K+              Y AA+LEYLTAE+LELAGNA++D K  R+TPRH+ LA+  DEEL+ L+KG TIA GGV+P+IH  L+     +K   E  +TP  ++
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPV-YMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AY_HUMAN (Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY PE=1 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-----NKSSKE*FVTPSSSR 479
            SRS++AG+ FPVGR+ R +K+              Y AA+LEYLTAE+LELAGNA++D K  R+TPRH+ LA+  DEEL+ L+KG TIA GGV+P+IH  L+     +K   E  +TP  ++
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPV-YMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AY_CHICK (Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 3 
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-----NKSSKE*FVTPSSSR 479
            SRS++AG+ FPVGR+ R +K+              Y AA+LEYLTAE+LELAGNA++D K  R+TPRH+ LA+  DEEL+ L+KG TIA GGV+P+IH  L+     +K   E  +TP  ++
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPV-YMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            V+RS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA+KD K  RI PRHL LA+R D+EL  L+ G TIA GGVIP+I+  L+ K S
Sbjct:   13 VTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            VSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K + E
Sbjct:   29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            VSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K + E
Sbjct:   29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            V++S +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA+KD K  RI PRHL LAIR D+EL  L+ G TIA GGVIP+I+  L+ K + E
Sbjct:   22 VTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKAAE 129
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            V+RS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA+KD K  RI PRHL LA+R D+EL  L+ G TIA GGVIP+I+  L+ K S
Sbjct:   13 VTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 61/105 (58.10%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 440
            V+RS RAGLQFPVGRV R LK+              Y AA+LEYL AEVLELAGNA++D K  RI+PRHL LA+R DEEL  L+ G TIA GGV+P+I+  L+ K
Sbjct:   24 VTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPK 127
[Close]
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.191e-22
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 3 
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINK 440
            VSRSS+AGLQFPVGR+ R LK               Y +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I + L+ K
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPK 122
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AY_MOUSE3.209e-2248.36Core histone macro-H2A.1 OS=Mus musculus GN=H2afy ... [more]
H2AY_HUMAN3.209e-2248.36Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY ... [more]
H2AY_CHICK3.209e-2248.36Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY... [more]
H2A5_WHEAT3.209e-2257.01Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A5_ORYSJ3.209e-2255.96Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI3.209e-2255.96Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A2_WHEAT3.209e-2255.96Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]
H2A1_WHEAT3.209e-2257.01Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A1_PEA3.209e-2258.10Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2AXA_ORYSJ4.191e-2256.19Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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