CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.191e-22
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINK 440
            VSRSS+AGLQFPVGR+ R LK               Y +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I + L+ K
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPK 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.191e-22
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            V+RS RAGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRHL LA+R DEEL  L+ G TIA GGV+P+I+  L+ K ++
Sbjct:   25 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKTE 131          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.474e-22
Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            VSRS +AGLQFPVGR+ R LK+     X        Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K + E
Sbjct:   29 VSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAE 136          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            V+RS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA+KD K  RI PRHL LA+R D+EL  L+ G TIA GGVIP+I+  L+ K +
Sbjct:   13 VTRSVKAGLQFPVGRIGRYLKKGRYAQAVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKA 118          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.338e-22
Identity = 61/116 (52.59%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE*FVTPSS 473
            V+RS RAGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI+PRHL LA+R D EL  L+ G TIA GGV+P+I+  L+ K ++     P S
Sbjct:   24 VTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRTESAASAPKS 138          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.338e-22
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            V+RS RAGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K ++
Sbjct:   24 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTE 130          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.593e-21
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            V+RS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRHL LA+R DEEL  L+ G T A GGV+P+I+  L+ K + E
Sbjct:   23 VTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKTAE 130          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AW_MOUSE (Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.593e-21
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 440
            +SRS+RAG+ FPVGR+ R LK+              Y AA++EYL AE+LELAGNA++D K  RI PRH+ LA+  DEEL+ L+KG TIA GGV+P IH  L+ K
Sbjct:   13 LSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPV-YMAAVIEYLAAEILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAK 116          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AW_HUMAN (Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.593e-21
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 440
            +SRS+RAG+ FPVGR+ R LK+              Y AA++EYL AE+LELAGNA++D K  RI PRH+ LA+  DEEL+ L+KG TIA GGV+P IH  L+ K
Sbjct:   13 LSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPV-YMAAVIEYLAAEILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAK 116          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.593e-21
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            V++S +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K S
Sbjct:   22 VTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPI-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127          
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AXA_ORYSI4.191e-2256.19Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A3_MEDTR4.191e-2255.56Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]
H2A_MAIZE5.474e-2256.88Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A6_WHEAT7.150e-2256.07Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2A2_PEA9.338e-2252.59Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A2_MEDTR9.338e-2254.63Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A_PETCR1.593e-2154.13Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2AW_MOUSE1.593e-2153.33Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2... [more]
H2AW_HUMAN1.593e-2153.33Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2... [more]
H2A1_SOLLC1.593e-2154.21Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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