CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  135 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            +S +AGL FPVGR   LL+               Y AA+LEYL+AE+LELAGNAS+D K KRITPR L LA+R DEEL+ L+ G TIA GGV+P+I + L+ K  K
Sbjct:   32 QSKKAGLTFPVGRTGSLLRAGRYAKRVGKGAPV-YLAAVLEYLSAELLELAGNASRDNKKKRITPRFLTLAVRNDEELNKLLSGVTIASGGVLPNIQQVLLKKKGK 136          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_DICDI (Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNA----SKDL-KVKRITPRHLQLAIRGDEELDTLIK--GTIAGGGVIPHIHKSL 431
            PV +S++AGL FPVGR+HR+LK               Y AAILEYL +EVLEL  +     SK+   V+RI+PRHL LAI+ DEELD LI+   TIAGGGVIP+IH+ L
Sbjct:   17 PVPKSTKAGLIFPVGRIHRMLKNKVPLKRVSILSSV-YLAAILEYLASEVLELTISQVSIQSKEYHNVRRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVL 124          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_STRPU (Histone H2A-beta, sperm (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.665e-19
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  135 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 377
            RSSRAGLQFPVGRVHR L++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L
Sbjct:    9 RSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 88          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 3
Query:  135 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKD--LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI--NKSSKE*FVTPSS 473
            RS++AGL FPVGRV  LL+               Y AA+LEYLTAE+LEL+  A+     K KR+TPR + LA+R D++L  L+K  T++ GGV+P ++K+L   +KSSK+   TPS+
Sbjct:   19 RSAKAGLIFPVGRVGSLLRRGQYARRIGASGAV-YMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKKHKSSKKARATPSA 135          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            P SRS+RAG+ FPV RV RLL+E              Y AA+LEYL  E+LELA N     K  RITP+H+  A+  D EL++L +  TIA GGV+P   +S   K  K
Sbjct:   34 PESRSARAGITFPVSRVDRLLREGRFAPRVESTAPV-YLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKK 141          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELA     ++  + +       ++  DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAWERLPEITKRPVLSPGTCNSLCNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AY_TETTH (Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTI--AGGGVIPHIHKSLINKSSK 449
            S S ++GL FP GR+ R LK+              Y A +LEYL AEVLE AGN +K+ ++ RI P H++ A R D EL+  + GTI   GG    +    +INKS K
Sbjct:  282 STSQKSGLVFPCGRLRRYLKQACKQFRVSSSCNI-YLAGVLEYLAAEVLETAGNIAKNNRLSRINPVHIREAFRNDAELNQFVNGTIIAEGGSTSTNFVLPIINKSKK 388          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            SRS+RA L FPV R+ ++++E              + AA+LEYLT E+LEL+   +      RITP+H+ L+I  D EL+ L+K  TIA GGV   IH  L++   K+
Sbjct:  132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPV-FLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKK 238          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-NKSSKE*FVTPSS 473
            S+S++ GL FPVGRV  +++               Y AA+LEYLTAE+LEL+  A+     K  R+ PR + LA R D+++ TL+K  T++  GV+P+I K++   K  K+   TPS+
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAV-YLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKKKGGKKGKATPSA 132          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-NKSSKE*FVTPSS 473
            S+S++ GL FPVGRV  +++               Y AA+LEYLTAE+LEL+  A+     K  R+ PR + LA R D+++ TL+K  T++  GV+P + K++   K  K+   TPS+
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAV-YLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKKGGKKGRATPSA 132          
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_EUGGR6.052e-2153.77Histone H2A OS=Euglena gracilis PE=2 SV=1[more]
H2AZ_DICDI3.321e-1954.13Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ ... [more]
H2A3_STRPU5.665e-1962.96Histone H2A-beta, sperm (Fragment) OS=Strongylocen... [more]
H2A_TRYCR1.706e-1545.76Histone H2A OS=Trypanosoma cruzi PE=3 SV=2[more]
H2AX_DICDI1.106e-1445.87Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2A2_XENLA1.886e-1444.86Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3[more]
H2AY_TETTH1.222e-1341.67Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY P... [more]
H2AV1_DICDI7.923e-1340.74Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]
H2A1_LEIIN6.707e-1238.98Histone H2A.1 OS=Leishmania infantum PE=2 SV=1[more]
H2A2_LEIIN1.952e-1138.14Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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