CX287116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21 Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = 3 Query: 135 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449 +S +AGL FPVGR LL+ Y AA+LEYL+AE+LELAGNAS+D K KRITPR L LA+R DEEL+ L+ G TIA GGV+P+I + L+ K K Sbjct: 32 QSKKAGLTFPVGRTGSLLRAGRYAKRVGKGAPV-YLAAVLEYLSAELLELAGNASRDNKKKRITPRFLTLAVRNDEELNKLLSGVTIASGGVLPNIQQVLLKKKGK 136
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_DICDI (Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19 Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 3 Query: 126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNA----SKDL-KVKRITPRHLQLAIRGDEELDTLIK--GTIAGGGVIPHIHKSL 431 PV +S++AGL FPVGR+HR+LK Y AAILEYL +EVLEL + SK+ V+RI+PRHL LAI+ DEELD LI+ TIAGGGVIP+IH+ L Sbjct: 17 PVPKSTKAGLIFPVGRIHRMLKNKVPLKRVSILSSV-YLAAILEYLASEVLELTISQVSIQSKEYHNVRRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVL 124
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_STRPU (Histone H2A-beta, sperm (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.665e-19 Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 3 Query: 135 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 377 RSSRAGLQFPVGRVHR L++ Y AA+LEYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L Sbjct: 9 RSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 88
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15 Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 3 Query: 135 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKD--LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI--NKSSKE*FVTPSS 473 RS++AGL FPVGRV LL+ Y AA+LEYLTAE+LEL+ A+ K KR+TPR + LA+R D++L L+K T++ GGV+P ++K+L +KSSK+ TPS+ Sbjct: 19 RSAKAGLIFPVGRVGSLLRRGQYARRIGASGAV-YMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKKHKSSKKARATPSA 135
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14 Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 3 Query: 126 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449 P SRS+RAG+ FPV RV RLL+E Y AA+LEYL E+LELA N K RITP+H+ A+ D EL++L + TIA GGV+P +S K K Sbjct: 34 PESRSARAGITFPVSRVDRLLREGRFAPRVESTAPV-YLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKK 141
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449 +RSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELA ++ + + ++ DEEL+ L+ G TIA GGV+P+I L+ K ++ Sbjct: 17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAWERLPEITKRPVLSPGTCNSLCNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AY_TETTH (Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13 Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTI--AGGGVIPHIHKSLINKSSK 449 S S ++GL FP GR+ R LK+ Y A +LEYL AEVLE AGN +K+ ++ RI P H++ A R D EL+ + GTI GG + +INKS K Sbjct: 282 STSQKSGLVFPCGRLRRYLKQACKQFRVSSSCNI-YLAGVLEYLAAEVLETAGNIAKNNRLSRINPVHIREAFRNDAELNQFVNGTIIAEGGSTSTNFVLPIINKSKK 388
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13 Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452 SRS+RA L FPV R+ ++++E + AA+LEYLT E+LEL+ + RITP+H+ L+I D EL+ L+K TIA GGV IH L++ K+ Sbjct: 132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPV-FLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKK 238
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12 Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-NKSSKE*FVTPSS 473 S+S++ GL FPVGRV +++ Y AA+LEYLTAE+LEL+ A+ K R+ PR + LA R D+++ TL+K T++ GV+P+I K++ K K+ TPS+ Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAV-YLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKKKGGKKGKATPSA 132
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11 Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-NKSSKE*FVTPSS 473 S+S++ GL FPVGRV +++ Y AA+LEYLTAE+LEL+ A+ K R+ PR + LA R D+++ TL+K T++ GV+P + K++ K K+ TPS+ Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAV-YLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKKGGKKGRATPSA 132 The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bpback to top |