CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_CRYNE (Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.364e-35
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSS 446
            +RSS+AGLQFPVGR+HR L+               Y A+I+EYLTAEVLELAGNA+KDL+VKRITPRHLQLAIRGDEELD LI+ TIAGGGV+PHIHKSL+ K++
Sbjct:   24 TRSSKAGLQFPVGRIHRFLRNKNANNVRIGAKAAVYVASIMEYLTAEVLELAGNAAKDLRVKRITPRHLQLAIRGDEELDLLIRATIAGGGVLPHIHKSLVAKNA 128          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_SCHPO (Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 4.773e-34
Identity = 73/108 (67.59%), Postives = 86/108 (79.63%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            +S S+RAGLQFPVGRV R LK               Y+AA+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIAGGGV+PHI+K L+ ++ ++
Sbjct:   25 MSHSARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLLIRTKEK 132          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_LODEL (Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.536e-32
Identity = 73/107 (68.22%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            S S+RAGLQFPVGRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRVKRYLKKQAQNKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_CANAL (Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.006e-32
Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            S S+RAGLQFPVGRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRVKRYLKRNAQNKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_PICST (Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.619e-32
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            S S+RAGLQFPVGR+ R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_PICGU (Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.619e-32
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            S S+RAGLQFPVGR+ R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRSAQNKVRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_DEBHA (Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 2.619e-32
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            S S+RAGLQFPVGR+ R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAFGGVLPHINKALLLKVEKK 129          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_YARLI (Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 440
            S SSRAGLQFPVGR+ R +K+              Y AA+LEYLTAEVLELAGNA++DLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+K+L+ K
Sbjct:   31 SHSSRAGLQFPVGRIKRYMKKSVQNKVRVGAKAAIYIAAVLEYLTAEVLELAGNAARDLKVKRITPRHLQLAIRGDEELDTLIQATIAYGGVMPHINKALLLK 133          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_KLULA (Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            S S+RAGLQFPVGRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA GGV+PHI+K+L+ K  K+
Sbjct:   24 SHSARAGLQFPVGRVKRYLKRNAAGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKK 130          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 452
            S S+RAGLQFPVGR+ R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA GGV+PHI+K+L+ K  K+
Sbjct:   24 SHSARAGLQFPVGRIKRYLKKNAAGKTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKK 130          
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AZ_CRYNE7.364e-3568.57Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 P... [more]
H2AZ_SCHPO4.773e-3467.59Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1... [more]
H2AZ_LODEL1.536e-3268.22Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1... [more]
H2AZ_CANAL2.006e-3268.22Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=... [more]
H2AZ_PICST2.619e-3267.29Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2[more]
H2AZ_PICGU2.619e-3267.29Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=... [more]
H2AZ_DEBHA2.619e-3267.29Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=... [more]
H2AZ_YARLI3.421e-3268.93Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 ... [more]
H2AZ_KLULA3.421e-3266.36Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3... [more]
H2AZ_ASHGO3.421e-3265.42Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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