CX287116 | Citrus Genome Database

Overview


Name	CX287116
Unique Name	CX287116
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX287116_ssr6	microsatellite	CX287116_ssr6:6..17.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574	contig	Ccv1_Contig574:107..682.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AJ_CHICK (Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHR LK+              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKT 120

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2C_MOUSE (Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2C_HUMAN (Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2C_BOVIN (Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2A_RAT (Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2h2aa3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2A_MOUSE (Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A2A_HUMAN (Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3

Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122

The following BLAST results are available for this feature:

BLAST of CX287116 vs. ExPASy Swiss-Prot

BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241


Match Name	E-value	Identity	Description
H2AJ_CHICK	3.101e-25	60.75	Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1	[more]
H2AJ_BOVIN	3.101e-25	60.75	Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1	[more]
H2A2_PSAMI	3.101e-25	60.38	Late histone H2A.2.1 OS=Psammechinus miliaris PE=2...	[more]
H2A2C_MOUSE	3.101e-25	60.75	Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac ...	[more]
H2A2C_HUMAN	3.101e-25	60.75	Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC ...	[more]
H2A2C_BOVIN	3.101e-25	60.75	Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE...	[more]
H2A2A_RAT	3.101e-25	60.75	Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2...	[more]
H2A2A_MOUSE	3.101e-25	60.75	Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1...	[more]
H2A2A_HUMAN	3.101e-25	60.75	Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3...	[more]
H2A1_RAT	3.101e-25	60.75	Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	C01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA