CX287116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 +RSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K + Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449 SRSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K ++ Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449 SRSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K ++ Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449 SRSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K ++ Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449 SRSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K ++ Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449 SRSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K ++ Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 +RSSRAGLQFPVGRVHR LK+ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K + Sbjct: 16 TRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_HUMAN (Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449 +RSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K ++ Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_BOVIN (Histone H2A type 1 OS=Bos taurus PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449 +RSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K ++ Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1J_HUMAN (Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 449 +RSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K ++ Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122 The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bpback to top |