CX287124

Overview
NameCX287124
Unique NameCX287124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_LACBS (Ubiquitin-related modifier 1 OS=Laccaria bicolor (strain S238N-H82) GN=URM1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  178 LLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            LL  +  +L+KER E+FM+  +VRPG+LVL+ND DWEL G+ +  L++ D +V ISTLHGG
Sbjct:   62 LLHHLRDHLLKEREELFMENGTVRPGILVLINDTDWELEGEGEYLLKDGDEIVLISTLHGG 122          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_COCIM (Ubiquitin-related modifier 1 OS=Coccidioides immitis GN=URM1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  178 LLSWVGTNLIK-ERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            L+ ++  NL+K ER E+F+  DSVRPG+LVL+ND DWEL G+    +++ D ++F+STLHGG
Sbjct:   54 LIKYLCQNLMKDERKELFVLDDSVRPGILVLINDADWELEGEEQYRIQQNDNILFVSTLHGG 115          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_ASPOR (Ubiquitin-related modifier 1 OS=Aspergillus oryzae GN=urm1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  178 LLSWVGTNLIK-ERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            LL ++  N++K ER E+FM  D+VRPG+LVL+ND DWEL G+    L+  D +VF+STLHGG
Sbjct:   59 LLEYLVKNVMKDERKELFMLEDNVRPGILVLINDADWELEGEEKYELQPADNIVFVSTLHGG 120          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_ASHGO (Ubiquitin-related modifier 1 OS=Ashbya gossypii GN=URM1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.948e-12
Identity = 33/81 (40.74%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  124 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            H V V    GS  + + DL+ ++ +N+I+++ ++  F++ +++RPG+L L+ND DWEL G+ +  LE+ D+V F STLHGG
Sbjct:   22 HQVSVEGANGS--VTVGDLIDYIVSNMIQKQKDVSVFLEDNTIRPGILTLINDTDWELEGEKEYVLEDGDIVSFTSTLHGG 100          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_CANGA (Ubiquitin-related modifier 1 OS=Candida glabrata GN=URM1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.960e-11
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  118 KVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            +V+++DV  P   E +   DL+ ++  NLI  K+  E+F++ DS+RPG++ L+ND DWEL  + +  +E+ DV+ F STLHGG
Sbjct:   20 RVYDLDV--PSQVENV--GDLIDYIIENLITNKKDVEVFIENDSIRPGIITLINDTDWELENEKEYVIEDGDVISFTSTLHGG 98          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_PICST (Ubiquitin-related modifier 1 OS=Pichia stipitis GN=URM1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.343e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  109 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            + V+ H++ V   +G  +  +KDL+  +  ++I +  ++  F++ D+VRPG+LVL+ND DWEL G  +  LE  DV  F STLHGG
Sbjct:   18 NKVREHSLKVPLEEG--EATVKDLIELITKSIIADPKDIPVFIEDDTVRPGILVLINDTDWELEGMEEYVLESGDVFTFTSTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_LODEL (Ubiquitin-related modifier 1 OS=Lodderomyces elongisporus GN=URM1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.365e-11
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  112 SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            SV+ H V +   +G  +  MK+ ++++  NL+ +  ++  F++  +VR G+LVL+ND DWEL G+ D  +E  DV++F STLHGG
Sbjct:   19 SVRDHKVTLPYEEG--EATMKEAVNYIAENLVTDPKDIPVFIEDGTVRAGILVLINDTDWELEGKEDYLVENGDVLIFTSTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DEBHA (Ubiquitin-related modifier 1 OS=Debaryomyces hansenii GN=URM1 PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.365e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  109 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            + V+ H  +V   +G   +I  DL+ ++   +I +  ++  F++  +VRPG+LVL+ND DWEL G  D  +E  DV+ F STLHGG
Sbjct:   18 NGVREHKCEVPLEEGEATMI--DLIKYITATIISDPKDVPVFIEEGTVRPGILVLINDTDWELEGMEDYVVESGDVLTFTSTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_YARLI (Ubiquitin-related modifier 1 OS=Yarrowia lipolytica GN=URM1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  109 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            D  K H +DV        L+   + + +  +  +E   +F++ +SVRPGVLVL+ND DWEL G+    L+ +DV++F STLHGG
Sbjct:   16 DGNKKHVLDVPEGSSVNWLLHHMVETLMPDHKREEGKNIFLQDESVRPGVLVLINDSDWELEGEDQYILQPRDVIIFASTLHGG 99          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM12_CANAL (Ubiquitin-related modifier 1 2 OS=Candida albicans GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  109 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            +SV+ H   V+P +  E  +  DL++++  N+I +  ++  F++  +VRPG+LVL+ND DWEL G  +  +E  DV  F STLHGG
Sbjct:   18 NSVREHKC-VIPFEEGEATVA-DLITYITKNIISDPKDIPVFIEDGTVRPGILVLINDTDWELEGMEEYVIESGDVFTFTSTLHGG 101          
The following BLAST results are available for this feature:
BLAST of CX287124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
URM1_LACBS1.357e-1254.10Ubiquitin-related modifier 1 OS=Laccaria bicolor (... [more]
URM1_COCIM2.315e-1251.61Ubiquitin-related modifier 1 OS=Coccidioides immit... [more]
URM1_ASPOR3.023e-1254.84Ubiquitin-related modifier 1 OS=Aspergillus oryzae... [more]
URM1_ASHGO3.948e-1240.74Ubiquitin-related modifier 1 OS=Ashbya gossypii GN... [more]
URM1_CANGA1.960e-1142.17Ubiquitin-related modifier 1 OS=Candida glabrata G... [more]
URM1_PICST3.343e-1140.70Ubiquitin-related modifier 1 OS=Pichia stipitis GN... [more]
URM1_LODEL4.365e-1140.00Ubiquitin-related modifier 1 OS=Lodderomyces elong... [more]
URM1_DEBHA4.365e-1139.53Ubiquitin-related modifier 1 OS=Debaryomyces hanse... [more]
URM1_YARLI7.446e-1140.48Ubiquitin-related modifier 1 OS=Yarrowia lipolytic... [more]
URM12_CANAL7.446e-1140.70Ubiquitin-related modifier 1 2 OS=Candida albicans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005A01SK Veg1 Citrus clementina cDNA clone C01005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287124 ID=CX287124; Name=CX287124; organism=Citrus clementina; type=EST; length=510bp
GTTCTCACATCTCTGTTCTTCTAGGGTTTTGCAAATTTCTGAAATTTCTG
CAAATCTTGAACCATGCAACTGACTCTAGAATTCGGTGGAGGGTTAGAGC
TTCTTTGTGATTCGGTAAAGGTCCATAATGTCGATGTTGTTCCACCAAAA
GGATCAGAGAAGTTGATTATGAAAGATTTGCTTTCTTGGGTCGGCACCAA
TTTGATCAAGGAGAGGCCTGAAATGTTCATGAAAGGAGATTCTGTGAGAC
CTGGTGTTCTAGTACTTGTGAATGATTGTGACTGGGAGCTCAGTGGGCAG
CTGGATACCACACTGGAGGAAAAGGATGTGGTTGTTTTTATTTCAACTTT
ACACGGCGGGTGATAAGCTAAATTATTGTAATTTCTTAGATGATAAGCAC
TTGTTATTGAAAATTGGTTGTACCCTTGTCTGGGTATTGAGTATGCTTGT
TGAAGCATGTGGAATGAGATGAAGATGTTGAATGTTTTGTTGAAAAAAAA
AAAAAAAAAA
back to top