CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.706e-32
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            R+ K ASY+ +K+AIK ASEG LKGI+GY +ED+VS DFVGDSRSSIFDAKAGI L+ +F+KLV+WYDNEWGYSNRV+DLI HMA
Sbjct:  250 RIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.656e-31
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            RL K ASYED+KAAIK ASEGSLKGILGYT+++VVS DF+GDS SSIFDAKAGI L+ +F+KL+SWYDNE+GYS RV+DL+ H+A V
Sbjct:  246 RLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAKV 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.656e-31
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            RLAK A+YE +KAAIK  SEG+LKGILGY DED+VS DF GDSRSSIFDAKAGI L+ +F+KLVSWYDNEWGYS RV+DLI HM
Sbjct:  218 RLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHM 301          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.688e-31
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K ASY+ +K AIK ASEG +KGILGYT++DVVS DF+ DSRSSIFDAKAGI LS +F+KLV+WYDNEWGYSNRV+DLI HMA
Sbjct:  252 RLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMA 336          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 63/85 (74.12%), Postives = 76/85 (89.41%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+Y+++KAAIK  SEG+LKGILGYT++ VVS DF+GDSRSSIFDA+AGI LS +F+KLVSWYDNEWGYS+RV+DLI HMA
Sbjct:  253 RLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMA 337          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+Y+++K AIK  SEG LKGILGYT++DVVS DFVGD+RSSIFDAKAGI LS  F+KLVSWYDNEWGYS+RV+DLI HM+
Sbjct:  252 RLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMS 336          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.217e-31
Identity = 62/84 (73.81%), Postives = 74/84 (88.10%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            +L K A+Y ++KAAIK  SEG LKGILGYT++DVVS DF+GDSRSSIFDAKAGI L+ +F+KLVSWYDNEWGYS+RV+DLI HM
Sbjct:  253 KLEKSATYGEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHM 336          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.073e-30
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            RL K A+Y+++KAA+K  +EGSLKGILGY +ED+VS DF GDSRSSIFDAKAGI L+ +F+KLVSWYDNEWGYS RV+DLI HM
Sbjct:  250 RLEKSATYDEIKAAVKAEAEGSLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVDLIRHM 333          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.073e-30
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLD--LIEHMA 259
            RL K ASYE++KA IK  SEG LKGILGYT+EDVVS DF+GD+RSSIFDAKAGI L+  F+KLVSWYDNEWGYS+RV+D  LI HMA
Sbjct:  252 RLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDFIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIVHMA 338          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.402e-30
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+Y+++K AIK  S+G LKGILGYT++DVVS DFVGD+RSSIFDAKAGI LS +F+KLVSWYDNEWGYS RV+DLI HM+
Sbjct:  252 RLEKAATYDEIKKAIKEESQGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMS 336          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3PC_ORYSI9.706e-3274.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI1.656e-3173.56Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3PC_HORVU1.656e-3177.38Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA3.688e-3175.29Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY4.817e-3174.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH4.817e-3174.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA8.217e-3173.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE1.073e-3072.62Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI1.073e-3074.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL1.402e-3072.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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