CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+++K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  234 CRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMA 319          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ +MA
Sbjct:  245 CRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF  +S SS FDA AGI L+ +F+KL+SWYDNE+GYSNRV+DL+ +MA
Sbjct:  245 CRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 53/78 (67.95%), Postives = 66/78 (84.62%), Query Frame = 2
Query:   20 ASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEH 253
            A+YE++  A++ A+ G LKG+LGYTDE VVS+DFVG+  SSIFDAKAGI L  +F+KLVSWYDNEWGYSNRV+DL+ H
Sbjct:  257 ATYEEICNAVREAANGELKGVLGYTDEQVVSSDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLLH 334          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ +MA
Sbjct:  245 CRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+++K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            C+  K  +Y+ +K  IK ASEG LKGILGY+++ +VS+D  GDSRSSIFDA AGI L+  F+KL+SWYDNEWGYS RV+DLI ++A V A
Sbjct:  246 CKTEKPVTYDQIKQTIKKASEGELKGILGYSEDALVSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAKVDA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.094e-26
Identity = 54/86 (62.79%), Postives = 73/86 (84.88%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            L+KGASY+++K AIK ASE ++KG+LGYT + VVS+DFVG+  SS+FDA AGI L+ +F+KL++WYDNE+GYSNRV+DL+ H A V
Sbjct:  248 LSKGASYDEIKQAIKKASETTMKGVLGYTSDAVVSSDFVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAAKV 333          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF   + SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.039e-25
Identity = 54/86 (62.79%), Postives = 69/86 (80.23%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K A+EG LKGILGYT++ VVS DF  +S SS FDA AGI L+ +F+KL+SWYDNE+GYSNRV+DL+ +MA
Sbjct:  245 CRLEKPAKYDDIKKVVKQAAEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMA 330          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P_SHEEP4.666e-2663.95Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MUSPF4.666e-2663.95Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_MOUSE4.666e-2663.95Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_MASBA4.666e-2667.95Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_CANFA4.666e-2663.95Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P_BOVIN4.666e-2663.95Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P_AJECA4.666e-2661.11Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P1_RHIRA6.094e-2662.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_RABIT7.959e-2663.95Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_RAT1.039e-2562.79Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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